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index.html
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<!DOCTYPE html>
<html lang="en">
<script>
//////////////////////////////////////////////////////////////////////////////////////////
// IN ORDER TO HOST YOUR COMMUNITY IN YOUR OWN SPACE, EDIT THE VARIABLES BELOW
var communityLink = 'https://raw.githubusercontent.com/NIDM-Terms/nidm-terms.github.io/master/availableCommunities.json' //Link to list of available communities JSON dictionary found in the UI repository
var contextLink = 'https://raw.githubusercontent.com/NIDM-Terms/terms/master/context/cde_context.jsonld' //Link to context file
var repoName = 'terms'; //Name of repository containing terms
//////////////////////////////////////////////////////////////////////////////////////////
</script>
<head>
<meta charset="UTF-8">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>NIDM-Terms: BIDS Specification Terms</title>
<!-- INCLUDING JQUERY-->
<script src= "https://code.jquery.com/jquery-3.5.1.js"></script>
<script src="./js_lib/jquery.treeView.js"></script>
<script src="https://cdn.jsdelivr.net/npm/jsonld@1.0.0/dist/jsonld.min.js"></script>
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/4.7.0/css/font-awesome.min.css">
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/4.7.0/css/font-awesome.min.css">
</head>
<body>
<header>
<div class="about">
<form action = "https://github.com/NIDM-Terms/terms" target="_blank">
<button class= "github">Github <i class="fa fa-github" style="font-size:17px"></i>
</button>
</form>
<form action = "https://scicrunch.org/nidm-terms/about/project" target="_blank">
<button class= "website">NIDM Website</button>
</form>
<form action = "http://nidm.nidash.org/" target="_blank">
<button class = "nidmSpecs"> NIDM Specs</button>
</form>
<form action ="https://github.com/incf-nidash/PyNIDM" target= "_blank" >
<button class= "pyNidm"> PyNIDM</a>
</form>
<form action ="https://incf-nidash.github.io/nidmterms-ui/#/annotate" target= "_blank" >
<button class= "annoTool"> CSV Annotation Tool</a>
</form>
</div>
<div class="logo-items">
<div class= "logo">
<img src="img/nidm-terms_576163.png" width= "70" height="70">
</div>
<div class="inner">
<h>NIDM-Terms</h>
</div>
<div class= "search-box">
<input id= "searchBar" class="search_bar" type="text" name="box" placeholder = "Search Terms" style="display:block;"><i id= "searchIcon" class="fa fa-search" style="font-size:24px"></i>
</div>
</div>
</header>
<div id = "loader" class="loader"> </div>
<div id = "grayScreen" class="grayScreen"></div>
<div id = "loadingText" class="loadingText">Loading Terms...</div>
<div>
<nav style="margin-top:175px;">
<ul class= "menuUl"><center>
<li class= "menuLi">
<form action= "index.html">
<button class = "browse_terms" type="submit">Browse Terms</button>
</form>
</li>
<li class= "menuLi">
<form action= "addNewTerm.html">
<button class = "add_terms" type="submit">Suggest Terms</button>
</form>
</li>
<li class= "menuLi">
<form action="createTable.html">
<button class = "createTable">Export Terms</button>
</form>
</li>
<li class= "menuLi">
<form action= "addCommunity.html">
<button class = "add_community" type="submit">Add New Community</button>
</form>
</li>
<li class= "menuLi">
<form action="info.html">
<button class = "resources">About</button>
</form>
</li>
<center><hr id="menuLine"></center>
</center></ul>
</nav>
</div>
<center>
<div id= "mainContainer" class="container">
<div id="communityHeader">
<h2 id="stepTitles">Communities<hr style="margin-top: 5px; margin-bottom: 50px;"></h2>
<div id="selectCommunity">
<center><table id="table"></table></center>
</div>
</div>
<br>
<h2 id="stepTitles">Terms
<button id = "selectBtn" class= "btn2" type = "button" style="margin-top:9px;"><i>Select Terms to Edit</i></button>
<button id = "editBtn" class= "btn2" type = "button" style="margin-top:9px;display:none;" disabled="true"><i>Edit Terms</i></button>
<button id = "cancelBtn" class= "btn2" type = "button" style="margin-top:9px;display:none;"><i>× Cancel</i></button>
<hr style="margin-top: 5px; margin-bottom: 50px;">
</h2>
<div id="termsView"></div>
<div id="selectCommunitiesAgain"></div>
<div id="noMatches"></div>
<button id="editBtn2"><i>Edit Terms</i></button>
<button id="scrollBtn"><i>Back to Top</i></button>
</div>
<div id="editContainer" class="container" style="display:none;">
<button id="backBtn" style="font-style:italic;font-weight:normal;color:#1f91c2;font-size:17px;display:inline-block;margin-left:-95px;">Back</button>
<h2 id="stepTitles">GitHub Access Token<hr style="margin-top: 5px;"></h2>
<div class="headerBrdr"><center>
The NIDM-Terms effort is focused on developing and adopting a set of community driven controlled vocabulary
for neuroimaging. NIDM-Terms infrastructure consists of a GitHub repository containing JSON-LD formatted
files for each term. Newly added terms will be sent as a pull request to our GitHub repository.
Therefore, in order to suggest a new term, a GitHub API Token must be provided.
</center></div>
<br>
<div class="keyInfo"><center>
For more information on GitHub personal access tokens click <a href= "https://docs.github.com/en/github/authenticating-to-github/creating-a-personal-access-token" target="_blank"> here</a>.
</center></div>
<br>
<form><input id = "token" type="password" placeholder="Enter GitHub Personal Access Token" required></form>
<form action="https://github.com/settings/tokens" target= "_blank">
<input class= "btn4" type = "submit" value="Generate GitHub Token">
</form>
<hr><br><br>
<div id = "instruct-bar">
To edit, please click on the desired term(s) and make your changes.
Click <a id = "here" style="color:#1f91c2;" href="https://github.com/NIDM-Terms/terms/blob/master/terms/README.md" target="_blank">here</a> to view data element property descriptions<br>
Changes will be reflected once the PR is merged.<br>
Removing the value of any property is equivalent to removing the entire property from the term.
</div>
<div id="editPage" style="margin-left:45px;">
<div id= "editInputs"></div>
<br><button id = "submitBtn" class= "btn" type = "button" style="display:none;"> Submit Edit for Review </button><br><br>
<!-- <br><button id = "submitBtn" class= "btn" type = "button" onclick="submitEdit()" style="display:none;"> Submit Edit for Review </button><br><br> -->
</div>
</div>
</center>
<style id = "style">
.treeview,
.treeview ul {list-style-type:none;
overflow:hidden;
padding-top: 20px;
/* margin-right: 30px; */
}
.treeview li {
text-indent:1%;
margin-top:0.4em;
padding:0.15em 0 0.5em 1.5em;
line-height:22px;
background-repeat:no-repeat;
background-size:24px 24px;
margin-right: 30px;
margin-bottom: -10px;
padding-bottom: 20px;
margin-top: -7.5px;
}
.treeview li.contains-items {background-image:url(
'js_lib/icons/arrow-left.png');
}
.treeview li.items-expanded {background-image:url(
'js_lib/icons/arrow-down.png'); }
.treeview>li:hover {
cursor:pointer;
background-color:rgba(236, 236, 236, 0.7);
}
.treeview2,
.treeview2 ul {
padding-top: 20px;
list-style-type:none;
overflow:hidden;
}
.treeview2 li {
text-indent:1%;
margin-top:0.4em;
padding:0.15em 0 0.5em 1.5em;
line-height:22px;
background-repeat:no-repeat;
background-size:24px 24px;
margin-right: 30px;
margin-bottom: -10px;
padding-bottom: 20px;
margin-top: -7.5px;
}
.treeview2 li.contains-items {
background-image:url(
'js_lib/icons/arrow-left.png');
}
.treeview2 li.items-expanded {background-image:url(
'js_lib/icons/arrow-down.png'); }
.treeview2>li:hover {cursor:pointer; background-color:rgba(236, 236, 236, 0.7);transition:0.3s;}
.treeview3,
.treeview3 ul {
padding-top: 20px;
list-style-type:none;
overflow:hidden;
}
.treeview3 li {
text-indent:1%;
margin-top:0.4em;
padding:0.15em 0 0.5em 1.5em;
line-height:22px;
background-repeat:no-repeat;
background-size:24px 24px;
margin-right: 30px;
margin-bottom: -10px;
padding-bottom: 20px;
margin-top: -7.5px;
}
.treeview3 li.contains-items {
background-image:url(
'js_lib/icons/arrow-left.png');
}
.treeview3 li.items-expanded {background-image:url(
'js_lib/icons/arrow-down.png'); }
.treeview3>li:hover {cursor:pointer; background-color:rgba(236, 236, 236, 0.7);transition:0.3s;}
/*#headerFixed{
position: fixed;
top: 0px;
width:100%;
height: 269px;
background-color: white;
}*/
header{
overflow:hidden;
position:fixed;
top:0;
width:100%;
z-index:2;
}
.about{
color: #52575e;
background-color: white;
height: 45px;
width:100%;
font-size: 12px;
cursor: pointer;
outline: none;
font-weight: lighter;
}
.github{
float: right;
margin-right: -10px;
color: #646464;
font-size: 13px;
width: 130px;
height:50px;
font-weight: lighter;
}
.github:hover{
color: #32e17c;
transition: 0.1s;
}
.website{
float: right;
margin-right: -30px;
color:#646464;
font-size: 13px;
width: 130px;
height:50px;
font-weight: lighter;
}
.website:hover{
color: #32e17c;
transition: 0.1s;
}
.nidmSpecs{
float: right;
margin-right: -20px;
color: #646464;
font-size: 13px;
width: 130px;
height:50px;
font-weight: lighter;
}
.nidmSpecs:hover{
color: #32e17c;
transition: 0.1s;
}
.pyNidm{
float: right;
margin-right: -30px;
color: #646464;
font-size: 13px;
width: 130px;
height:50px;
font-weight: lighter;
}
.pyNidm:hover{
color: #32e17c;
transition: 0.1s;
}
.annoTool{
float: right;
margin-right: -20px;
color: #646464;
font-size: 13px;
width: 150px;
height:50px;
font-weight: lighter;
}
.annoTool:hover{
color: #32e17c;
transition: 0.1s;
}
.inner{
margin-top:-60px;
padding-left: 124px;
font-weight:lighter;
font-size: 40px;
font-family: serif;
text-transform: uppercase;
color: white;
}
.logo{
display: inline-block;
margin-left:20px;
margin-top:15px;
}
.logo-items{
margin-top:0;
background-color: #52575e;
height: 100px;
width:100%;
}
#stepTitles{
font-size: 32px;
color: #6e6d6d;
font-weight: 200;
margin-left: 5px;
margin-right: 5px;
}
.search_bar{
float: right;
margin-top: -47px;
margin-right: 50px;
border: 2px solid #32e17c;
height: 45px;
width: 325px;
border-radius: 3px;
background-color: #fefcfb;
font-size: 18px;
text-indent: 65px;
outline: none;
color: #52575e;
}
#searchIcon{
color: #828486;
float: right;
margin-top: -35px;
margin-right: -48px;
}
body {
background-color: #ffffff;
}
.menuUl{
width: auto;
margin-top: 40px;
}
.menuLi{
display: inline-block;
padding: 20px 5px;
}
button{
width: 235px;
height: 60px;
background-color: transparent;
border: transparent;
border-radius: 0px;
font-size: 18px;
font-weight:bold;
cursor: pointer;
outline: none;
}
.browse_terms{
color: #EA2027;
border: 2px solid #EA2027;
border-radius: 5px;
}
.add_terms{
color: #EE5A24;
}
.add_terms:hover{
border: 2px solid #EE5A24;
border-radius: 5px;
}
.createTable{
color: #f1842b;
}
.createTable:hover{
border: 2px solid #f1842b;
border-radius: 5px;
}
.add_community{
color: #F79F1F;
}
.add_community:hover{
border: 2px solid #F79F1F;
border-radius: 5px;
}
.resources{
color: #FFC312;
}
.resources:hover{
border: 2px solid #FFC312;
border-radius: 5px;
}
#menuLine{
height: 10px;
background-image: linear-gradient(
to right,
#EA2027,
#EE5A24,
#F79F1F,
#FFC312
);
margin-top: -23px;
width: 1450px;
border: 0 none;
}
.container{
width: 1050px;
height: 170%;
text-align: left;
font-family:Arial, Helvetica, sans-serif;
border: 1px solid #b3b3b3 ;
border-radius: 0px;
padding: 80px;
padding-top: 80px;
padding-right: -10px;
margin-top: 50px;
margin-bottom: 100px;
background-color: #F7F7F7 ;
box-shadow: 0px 8px 16px 0px rgba(0,0,0,0.2);
}
/* pop-up display for community descriptions when hover over checkbox label */
input + .des-tool-tip-text {
display: none;
}
input:hover + .des-tool-tip-text {
display: block;
position: absolute;
text-align:left;
padding: 0.3em;
width: 150px;
bottom: 150%;
font-size: 16px;
background: #52575e81;
color: rgb(238, 238, 238);
border-radius: 3px;
}
/* the triangular point of the pop-up box */
input:hover + .des-tool-tip-text:after {
content: "";
position: absolute;
border:1px solid #52575e67;
left: 0%;
top: 100%;
width: 0;
height: 0;
border-left: 5px solid transparent;
border-right: 5px solid transparent;
border-top: 10px solid #52575e67;
border-bottom: 5px solid transparent;
}
/************** Tool Tip Styles ********************************/
.tool-tip {
display: inline-block;
position: absolute;
margin-left: 0.5em;
}
.tool-tip .tool-tip__icon {
border-radius: 10px;
cursor: pointer;
font-style: italic;
font-family: times new roman;
height: 18px;
line-height: 1.3em;
width: 18px;
margin-top: -8px;
color: #43acdd;
}
.tool-tip .tool-tip__info {
display: none;
background: #52575e;
border: 1px solid #52575e;
border-radius: 3px;
font-size: 16px;
color: rgb(238, 238, 238);
padding: 1em;
position: absolute;
left: 27px;
top: -20px;
width: 500px;
z-index: 0;
text-indent: 7px;
font-family:sans-serif;
font-weight: normal;
}
.tool-tip .tool-tip__info:before, .tool-tip .tool-tip__info:after {
content: "";
position: absolute;
left: -10px;
top: 7px;
border-style: solid;
border-width: 10px 10px 10px 0;
border-color: transparent #52575e;
}
.tool-tip .tool-tip__info:after {
left: -8px;
border-right-color: #52575e;
}
.tool-tip .tool-tip__info .info {
display: block;
}
.tool-tip .tool-tip__info .info__title {
color: #2a2b2c;
}
.tool-tip:hover .tool-tip__info, .tool-tip:focus .tool-tip__info {
display: inline-block;
}
a:focus + .tool-tip .tool-tip__info {
display: inline-block;
}
/* pop-up display for community descriptions when hover over checkbox label */
input + .des-tool-tip-text {
display: none;
}
input:hover + .des-tool-tip-text {
display: block;
position: absolute;
text-align:left;
padding: 0.3em;
width: 150px;
bottom: 150%;
font-size: 16px;
background: #52575e81;
color: rgb(238, 238, 238);
border-radius: 3px;
}
/* the triangular point of the pop-up box */
input:hover + .des-tool-tip-text:after {
content: "";
position: absolute;
border:1px solid #52575e67;
left: 0%;
top: 100%;
width: 0;
height: 0;
border-left: 5px solid transparent;
border-right: 5px solid transparent;
border-top: 10px solid #52575e67;
border-bottom: 5px solid transparent;
}
.step2_tool-tip {
display: inline-block;
position: absolute;
margin-left: 0.5em;
}
.step2_tool-tip .step2_tool-tip__icon {
border-radius: 10px;
cursor: pointer;
font-style: italic;
font-family: times new roman;
height: 18px;
line-height: 1.3em;
width: 18px;
margin-left: 90px;
margin-top: 70px;
color: #43acdd;
}
.step2_tool-tip .step2_tool-tip__info {
display: none;
background: #52575e;
border: 1px solid #52575e;
border-radius: 3px;
font-size: 16px;
color: rgb(238, 238, 238);
padding: 1em;
position: absolute;
left: 320px;
top: -23px;
width: 500px;
z-index: 0;
text-indent: 7px;
font-family:sans-serif;
font-weight: normal;
}
.step2_tool-tip .step2_tool-tip__info:before, .step2_tool-tip .step2_tool-tip__info:after {
content: "";
position: absolute;
left: -10px;
top: 7px;
border-style: solid;
border-width: 10px 10px 10px 0;
border-color: transparent #52575e;
}
.step2_tool-tip .step2_tool-tip__info:after {
left: -8px;
border-right-color: #52575e;
}
.step2_tool-tip .step2_tool-tip__info .info {
display: block;
}
.step2_tool-tip .step2_tool-tip__info .step2_info__title {
color: #2a2b2c;
}
.step2_tool-tip:hover .step2_tool-tip__info, .step2_tool-tip:focus .step2_tool-tip__info {
display: inline-block;
}
a:focus + .step2_tool-tip .step2_tool-tip__info {
display: inline-block;
}
.newComInput{
width: 90%;
height: 45px;
border-radius: 3px;
border: 1px solid #919191;
padding: 0px 20px;
background-color: #fdfdfd;
text-indent: 10px;
outline: none;
font-size: 16px;
margin-top: 5px;
margin-bottom: 30px;
border-top-color: #9e9e9e;
border-right-color: #9e9e9e;
border-left-color: #9e9e9e;
border-bottom-color: #9e9e9e;
}
.addedInput{
width: 90%;
height: 45px;
border-radius: 3px;
border: 1px solid #919191;
padding: 0px 20px;
background-color: #fdfdfd;
text-indent: 10px;
outline: none;
font-size: 16px;
margin-top: 5px;
margin-bottom: 30px;
border-top-color: #9e9e9e;
border-right-color: #9e9e9e;
border-left-color: #9e9e9e;
border-bottom-color: #9e9e9e;
}
.numOfValues{
margin-top: -20px;
border: 1px solid #9e9e9e;
border-radius: 3px;
width: 70%;
height: 50px;
text-indent: 25px;
font-size: 16px;
outline: none;
}
h4{
color: rgb(85, 85, 85);
}
.inputs{
padding-top: 3px;
padding-left: 75px;
font-size: 15px;
color: #686666;
text-align: justify;
text-justify: inter-word;
padding-left: 20px;
line-height: 26px;
margin-left: 80px;
margin-right: 55px;
}
.subTermInput{
height: 35px;
width: 30%;
border-radius: 5px;
border-color: #7e7e7e;
padding: 0px 20px;
background-color: #fdfdfd;
font-size: 18px;
text-indent: 10px;
outline: none;
font-size: 16px;
margin-left: 35px;
margin-top: 5px;
margin-bottom: 30px;
}
/* The container */
.con {
display: inline-block;
position: relative;
padding-left: 35px;
cursor: pointer;
font-size: 16px;
-webkit-user-select: none;
-moz-user-select: none;
-ms-user-select: none;
user-select: none;
}
/* Hide the browser's default checkbox */
.con input {
position: absolute;
opacity: 0;
cursor: pointer;
height: 0;
width: 0;
}
/* Create a custom checkbox */
.checkmark {
position: absolute;
top: 0;
left: 0;
height: 22px;
width: 22px;
background-color: rgb(219, 217, 217);
}
/* On mouse-over, add a grey background color */
.con:hover input ~ .checkmark {
background-color: #ccc;
}
/* When the checkbox is checked, add a blue background #2196F3 */
.con input:checked ~ .checkmark {
background-color: #2196F3;
}
/* Create the checkmark/indicator (hidden when not checked) */
.checkmark:after {
content: "";
position: absolute;
display: none;
}
/* Show the checkmark when checked */
.con input:checked ~ .checkmark:after {
display: block;
}
/* Style the checkmark/indicator */
.con .checkmark:after {
left: 8px;
top: 3px;
width: 4px;
height: 10px;
border: solid white;
border-width: 0 3px 3px 0;
-webkit-transform: rotate(45deg);
-ms-transform: rotate(45deg);
transform: rotate(45deg);
}
/* The container for edit terms checkboxes */
.editCon {
position: relative;
margin-top:23px;
float: right;
margin-right:50px;
cursor: pointer;
font-size: 16px;
-webkit-user-select: none;
-moz-user-select: none;
-ms-user-select: none;
user-select: none;
}
/* Hide the browser's default checkbox */
.editCon input {
position: absolute;
opacity: 0;
cursor: pointer;
height: 0;
width: 0;
}
/* Create a custom checkbox */
.editCheckmark {
position: absolute;
top: 0;
left: 0;
height: 22px;
width: 22px;
background-color: rgb(219, 217, 217);
}
/* On mouse-over, add a grey background color */
.editCon:hover input ~ .editCheckmark {
background-color: #ccc;
}
/* When the checkbox is checked, add a blue background #2196F3 */
.editCon input:checked ~ .editCheckmark {
background-color: #2196F3;
}
/* Create the checkmark/indicator (hidden when not checked) */
.editCheckmark:after {
content: "";
position: absolute;
display: none;
}
/* Show the checkmark when checked */
.editCon input:checked ~ .editCheckmark:after {
display: block;
}
/* Style the checkmark/indicator */
.editCon .editCheckmark:after {
left: 8px;
top: 3px;
width: 4px;
height: 10px;
border: solid white;
border-width: 0 3px 3px 0;
-webkit-transform: rotate(45deg);
-ms-transform: rotate(45deg);
transform: rotate(45deg);
}
#scrollBtn {
display: none;
position: fixed;
bottom: 70px;
left: 20px;
color:#73767a;
background:#73767a13;
border-radius:60px;
cursor:pointer;
font-family:Arial;
font-size:14px;
text-decoration:none;
padding:0px;
width:75px;
height:75px;
transition: all 2s linear;
}
#scrollBtn:hover {
background:#2f303113;
}
#editBtn2 {
display: none;
position: fixed;
bottom: 160px;
left: 20px;
color:#73767a;
background:#73767a13;
border-radius:60px;
cursor:pointer;
font-family:Arial;
font-size:14px;
text-decoration:none;
padding:0px;
width:75px;
height:75px;
transition: all 2s linear;
}
#editBtn2:hover {
background:#2f303113;
}
#options{
margin-top: -38px;
color: rgb(85, 85, 85);
}
table{
background-color: rgb(240, 240, 240);
border: 20px solid rgb(240, 240, 240);
border-collapse: collapse;
width: 90%;
margin-left:20px;
vertical-align: middle;
word-wrap: break-word;
color: rgb(85, 85, 85);
}
td, tr {
padding:10px;
/* width:150px; */
text-align: left;
vertical-align: middle;
}
td {
padding: 15px;
}
.loader {