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I am running CAM-SE with DART with a modified version of assimilate.csh.template. In the final section, the final section where the script cleans up the large DART files, it calls compress.csh.
Error Message
When I tried to run compress.csh independently, compress.out prompts Can't find executable launch_cf.sh
I managed to get it to work with a launch_cf.sh I found somewhere else and by changing the line to mpiexec -n $task ./launch_cf.sh ./mycmdfile since mpiexec_mpt is not supported on Derecho
#!/bin/bash## DART software - Copyright UCAR. This open source software is provided# by UCAR, "as is", without charge, subject to all terms of use at# http://www.image.ucar.edu/DAReS/DART/DART_download## $Id$# for command file jobs.# Sidd Ghosh Feb 22, 2017# Slurm added by Kevin Raeder July 6, 2019# On casper's PBS the PMI_RANK variable is not defined,# but OMPI_COMM_WORLD_LOCAL_RANK is (different # from OMPI_COMM_WORLD_RANK, which is also defined)# Also, PBS_O_WORKDIR is defined, so it goes into the wrong section.# The system launch_cf.sh (cheyenne only) tests directly for -z {env_var_name}# export # echo "launch_cf.sh; OMPI_COMM_WORLD_LOCAL_RANK = $OMPI_COMM_WORLD_LOCAL_RANK"# cheyenne has this, but calling script needs MPI_SHEPHERD# echo " PMI_RANK = $PMI_RANK"if [ !-z"$PMI_RANK" ];then
line=$(expr $PMI_RANK + 1)# echo "launch_cf.sh using PMI_RANK with line = $line"elif [ !-z"$OMPI_COMM_WORLD_RANK" ];then
line=$(expr $OMPI_COMM_WORLD_RANK + 1)# echo "launch_cf.sh using OMPI_COMM_WORLD_RANK with line = $line"elseecho"Batch environment is unknown"exit 11
fi
INSTANCE=$(sed -n ${line}p $1)# The following command showed that 563 tasks are launched within .3 seconds.# echo "launching $INSTANCE at "; date --rfc-3339=nseval"$INSTANCE"# <next few lines under version control, do not edit># $URL$# $Id$# $Revision$# $Date$
Version of DART
v10.8.4
Have you modified the DART code?
No
Build information
The machine you are running on Derecho
The compiler you are using Intel
The text was updated successfully, but these errors were encountered:
Describe the bug
Which model(s) are you working with?
I am running CAM-SE with DART with a modified version of assimilate.csh.template. In the final section, the final section where the script cleans up the large DART files, it calls compress.csh.
Error Message
When I tried to run compress.csh independently, compress.out prompts
Can't find executable launch_cf.sh
I managed to get it to work with a
launch_cf.sh
I found somewhere else and by changing the line tompiexec -n $task ./launch_cf.sh ./mycmdfile
since mpiexec_mpt is not supported on DerechoVersion of DART
v10.8.4
Have you modified the DART code?
No
Build information
The text was updated successfully, but these errors were encountered: