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NEWS.md

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genecovr 0.1.1

  • update README
  • add Empirical studies section

genecovr 0.1.0

  • add pkgdown site

genecovr 0.0.0.9013

  • fix factor level ordering for geneBodyCoverage plot
  • save geneBodyCoverage as tsv

genecovr 0.0.0.9012

  • adjust factor levels for number of inserts (#4)
  • summarize number of inserts by transcript (#5)

genecovr 0.0.0.9011

  • fix order of factors

genecovr 0.0.0.9010

  • remove duplicate entries in psl input

genecovr 0.0.0.9009

  • add plot of transcript length distributions conditioned on number of mapped contigs
  • fix y axis for histogram plots
  • increase point size of some plots
  • summarizeGeneBodyCoverage and countSubjectsByCoverage now accept DataFrame inputs, obviating the need to rerun geneBodyCoverage multiple times in genecovr script

genecovr 0.0.0.9008

  • Remove characters trailing first space in fasta headers

genecovr 0.0.0.9007

  • Fix conversion of DNAStringSet to Seqinfo
  • Make sure geneBodyCoverage table has nmax levels

genecovr 0.0.0.9006

  • add depthOfCoverage function and analysis to vignette and script
  • reduceHitCoverage is deprecated
  • improve some docs
  • add wrapper for saving plots
  • add tests mainly for alignmentpairs and test setup