KeyError: 'antibody_treemap_plot' in cellranger outout web_summary.html from a CITEseq experiment

[yige-luo]

Description of bug

The bug seems to concern the Antigen Derived Tag (ADT) component in the web_summary.html generated from cellranger (in addition to single-cell gene expression data). The Antibody-based QC metrics seem not to be included in the current html parsing.

File that triggers the error

web_summary.html.zip

MultiQC Error log

(py3.11) ➜  CiteSeq git:(main) ✗ multiqc . 

  /// MultiQC 🔍 | v1.21

|           multiqc | Search path : /Users/luoyx10/Library/CloudStorage/OneDrive-AbbVieInc(O365)/Projects/ABBV438/data/human/PBMC/CiteSeq
|         searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 64/64  
╭─────────────── Oops! The 'cellranger' MultiQC module broke... ───────────────╮
│ Please copy this log and report it at                                        │
│ https://github.com/MultiQC/MultiQC/issues                                    │
│ Please attach a file that triggers the error. The last file found was:       │
│ data/110044049_1ugmlDC-2027622/web_summary.html                              │
│                                                                              │
│ Traceback (most recent call last):                                           │
│   File "/Users/luoyx10/miniconda3/envs/py3.11/lib/python3.11/site-packages/m │
│     output = mod()                                                           │
│              ^^^^^                                                           │
│   File "/Users/luoyx10/miniconda3/envs/py3.11/lib/python3.11/site-packages/m │
│     n["count"] = self.parse_count_html()                                     │
│                  ^^^^^^^^^^^^^^^^^^^^^^^                                     │
│   File "/Users/luoyx10/miniconda3/envs/py3.11/lib/python3.11/site-packages/m │
│     self.parse_count_report(f)                                               │
│   File "/Users/luoyx10/miniconda3/envs/py3.11/lib/python3.11/site-packages/m │
│     summary["antibody_tab"]["antibody_treemap_plot"]["plot"]["data"][0]["lab │
│     ~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^                         │
│ KeyError: 'antibody_treemap_plot'                                            │
│                                                                              │
╰──────────────────────────────────────────────────────────────────────────────╯
|           multiqc | Report      : multiqc_report.html
|           multiqc | Data        : multiqc_data
|           multiqc | MultiQC complete

Before submitting

• I have read the troubleshooting documentation.
• I am using the latest release of MultiQC.
• I have included a full MultiQC log, not truncated.
• I have attached an input file (.zip if necessary) that triggers the error.

[vladsavelyev]

@yige-luo, thanks for submitting an issue and a test example, and sorry about the bug! It should be fixed with #2525