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Cutadapt module broke #2519

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4 tasks done
xguo-nveloptx opened this issue Apr 30, 2024 · 1 comment
Closed
4 tasks done

Cutadapt module broke #2519

xguo-nveloptx opened this issue Apr 30, 2024 · 1 comment

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@xguo-nveloptx
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Description of bug

Hi,
I originally have multiqc v4.8 in Ubuntu 22. But it failed to capture log files from Cutadapt.

image

So I tried the followings:

  1. add a config file with the following lines:
Cutadapt:
  - contents: Cutadapt
    num_lines: 100
  - fn: "*cutadapt.json"
    contents: Cutadapt report

Then it seems to trying to capture log files from snippy and found no data. showing:
image

  1. I installed another copy of multiqc using conda and ran it, then the following message shown:
image

Note: I removed the config file when running the new installed copy.

Could you please advise?

File that triggers the error

No response

MultiQC Error log

No response

Before submitting

  • I have read the troubleshooting documentation.
  • I am using the latest release of MultiQC.
  • I have included a full MultiQC log, not truncated.
  • I have attached an input file (.zip if necessary) that triggers the error.
@xguo-nveloptx
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I figured it out. One malformed file ruin it.

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