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Coverage instead of Average coverage per contig or chromosome #2294

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mushalallam opened this issue Feb 7, 2024 · 1 comment
Open
4 tasks done

Coverage instead of Average coverage per contig or chromosome #2294

mushalallam opened this issue Feb 7, 2024 · 1 comment
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waiting: example data Needs example data before we can proceed waiting: response Waiting for more information from user

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@mushalallam
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Description of bug

Hi MultiQC,
Thank you for all support
I use MultiQC for my FASTQs, VCFs, and BAMs generated by Illumina DRAGEN (WES/WGS), but I noticed in the MultiQC recent version (am currently using v1.20.dev0) it plot Average coverage per contig instead of Coverage per contig which is clear for me, but the new average I cant understand it, could you please advice if I can plot the old way or maybe advise with a documentation where I can understand the new Average coverage per contig or chromosome plot
Thanks once again

File that triggers the error

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Before submitting

  • I have read the troubleshooting documentation.
  • I am using the latest release of MultiQC.
  • I have included a full MultiQC log, not truncated.
  • I have attached an input file (.zip if necessary) that triggers the error.
@vladsavelyev
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@mushalallam, not sure I understand.

Could you please share a screenshot of the new plot that you don't understand, along with the old plot that you've seen before? And also, can you share please the data you are passing to MultiQC, so I can reproduce it locally.

Is this the plot you are talking about?

dragen_coverage_per_contig

@vladsavelyev vladsavelyev added waiting: example data Needs example data before we can proceed waiting: response Waiting for more information from user labels Feb 12, 2024
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