Thank you!

I started a module here #2180 - so far only parsing the CSV table.

Just wondering if the pipeline outputs and raw data for the plots? So far, the plot data is only available through parsing the hardcoded java script in the HTMLs, which is not ideal, and the HTMLs is pretty huge (>4 MB per sample).

sorry for late response, and thank you for developing parse module

here is the full output directory from 200 cell parse run. maybe it will help with getting additional stats and plots:

https://drive.google.com/file/d/1xc2eeIUshezSXLTafGU9xRvZq_SMxt5G/view?usp=drive_link

Thanks @mbatiuk! I can't seem to open that archive though 🤔

OK, I re-uploaded it, here is the link:

https://drive.switch.ch/index.php/s/Ug3MNDYJfv2xm5H

the issue with access permissions should be solved. if still present - try to unzip, and do chmod -R 777 /UNZIPPED_ARCHIVE_DIRECTORY_ADDRESS

Thanks! The archive is pretty massive (434MB). I just downloaded it and stripped out all of the big raw data files (BAM files, fastq, gene matrices etc). It's now small enough to attach to a GitHub comment (13MB): 200nucs_small.zip

I think that this archive should still contain all files relevant to MultiQC.