{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":40187375,"defaultBranch":"main","name":"MultiQC","ownerLogin":"MultiQC","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2015-08-04T13:47:05.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/18548644?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1714385461.0","currentOid":""},"activityList":{"items":[{"before":"25cf1cbb61a48a54e3e5667b5a77ff59224170ce","after":"452e156e6289d805d1b5384c5de403f1cd997c8c","ref":"refs/heads/interactive-use-2","pushedAt":"2024-04-30T14:59:43.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Add load_config public function, plus add config.reset","shortMessageHtmlLink":"Add load_config public function, plus add config.reset"}},{"before":"931de5d96e4e50890b8bb43e9c480244acd09533","after":"e534f51b6537ca8e792c87b51028863ade3c5047","ref":"refs/heads/main","pushedAt":"2024-04-30T13:19:16.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Reduce Sequali and (slightly) FastQC memory footprint (#2516)\n\n* Do not store data in module object\r\n\r\n* Remove FastQC permanent data storage\r\n\r\n* Prune sequali dictionaries for much reduced memory usage","shortMessageHtmlLink":"Reduce Sequali and (slightly) FastQC memory footprint (#2516)"}},{"before":"6215c769c8e8ec4d90a2ceb843562649e7a1707f","after":"25cf1cbb61a48a54e3e5667b5a77ff59224170ce","ref":"refs/heads/interactive-use-2","pushedAt":"2024-04-29T19:24:30.000Z","pushType":"push","commitsCount":9,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Move dump_json into util_functions.py","shortMessageHtmlLink":"Move dump_json into util_functions.py"}},{"before":"d0b503784a06d6cf69968406c9a38a3abbf1e52e","after":"6215c769c8e8ec4d90a2ceb843562649e7a1707f","ref":"refs/heads/interactive-use-2","pushedAt":"2024-04-29T19:00:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Move notebook to MultiQC_Notebook","shortMessageHtmlLink":"Move notebook to MultiQC_Notebook"}},{"before":"1d4d50eb19fac9c600d6232d7409edfe02a560ec","after":"931de5d96e4e50890b8bb43e9c480244acd09533","ref":"refs/heads/main","pushedAt":"2024-04-29T17:20:02.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Search file blocks rather than individual lines for faster results (#2513)\n\n* Search file blocks rather than individual lines for faster results\r\n\r\n* Add a more correct documentation of the line block algorithm\r\n\r\n* Minor renaming and add comments\r\n\r\n---------\r\n\r\nCo-authored-by: Vlad Savelyev ","shortMessageHtmlLink":"Search file blocks rather than individual lines for faster results (#…"}},{"before":"4c453107d5e6f60224b71dd48555566aa81f0a13","after":"1d4d50eb19fac9c600d6232d7409edfe02a560ec","ref":"refs/heads/main","pushedAt":"2024-04-29T12:31:16.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Use gzip rather than lzstring for compression and decompression of the plot data (#2504)\n\n* Use gzip rather than lzstring for compression and decompression\r\n\r\n* Use pako to decompress instead of new DecompressionStream, remove async\r\n\r\n* Add pako lib\r\n\r\n* Remove non-default arguments from gzip call\r\n\r\n* Use a smaller pako_inflate.min.js\r\n\r\n* Decompress with DecompressionStream, fall back to pako\r\n\r\n* Add decompress.js\r\n\r\n---------\r\n\r\nCo-authored-by: Vlad Savelyev ","shortMessageHtmlLink":"Use gzip rather than lzstring for compression and decompression of th…"}},{"before":"1c5f5bf196e7e03677ac6322325af948c4260398","after":null,"ref":"refs/heads/sortedreportsearching2","pushedAt":"2024-04-29T11:36:01.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"}},{"before":"4b6ce2b57aaf721cb2a86972af8589bf7a347f31","after":"4c453107d5e6f60224b71dd48555566aa81f0a13","ref":"refs/heads/main","pushedAt":"2024-04-29T11:36:01.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Refactor file patterns sort by num_lines [skip changelog] (#2512)\n\n* Sort filepatterns for faster searching\r\n\r\n* Refactor sorting search patterns\r\n\r\n---------\r\n\r\nCo-authored-by: Ruben Vorderman ","shortMessageHtmlLink":"Refactor file patterns sort by num_lines [skip changelog] (#2512)"}},{"before":"0ae4cca6481e959619c1cf1549d69b2b4a28cdd3","after":"1c5f5bf196e7e03677ac6322325af948c4260398","ref":"refs/heads/sortedreportsearching2","pushedAt":"2024-04-29T10:13:25.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Merge branch 'main' into sortedreportsearching2","shortMessageHtmlLink":"Merge branch 'main' into sortedreportsearching2"}},{"before":null,"after":"0ae4cca6481e959619c1cf1549d69b2b4a28cdd3","ref":"refs/heads/sortedreportsearching2","pushedAt":"2024-04-29T10:11:01.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Merge branch 'main' into sortedreportsearching","shortMessageHtmlLink":"Merge branch 'main' into sortedreportsearching"}},{"before":"66c8c580705cfcce4e2330940ba6c4f9fc09db5c","after":"4b6ce2b57aaf721cb2a86972af8589bf7a347f31","ref":"refs/heads/main","pushedAt":"2024-04-29T10:08:03.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Refactor file content searching for a 40% speed increase (#2505)\n\n* Refactor file content searching\r\n\r\n* Typo\r\n\r\n* Add docstring comments\r\n\r\n---------\r\n\r\nCo-authored-by: Vlad Savelyev ","shortMessageHtmlLink":"Refactor file content searching for a 40% speed increase (#2505)"}},{"before":"7cd623ce566bacd9b7dceceb8993087d05b461ed","after":"66c8c580705cfcce4e2330940ba6c4f9fc09db5c","ref":"refs/heads/main","pushedAt":"2024-04-27T18:42:50.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Sort filepatterns for faster searching (#2506)\n\nCo-authored-by: Vlad Savelyev ","shortMessageHtmlLink":"Sort filepatterns for faster searching (#2506)"}},{"before":"425b0d7ff0b22a8b6f45ca9b3f8243e9fb67d0f7","after":"7cd623ce566bacd9b7dceceb8993087d05b461ed","ref":"refs/heads/main","pushedAt":"2024-04-27T18:27:06.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Stream json data to a file to save 30% of the memory. (#2510)\n\n* Stream json data to a file to prevent using excessive memory\r\n\r\n* More places where JSON dump can be optimized. Replace sanitise_json with dump_json\r\n\r\n---------\r\n\r\nCo-authored-by: Vlad Savelyev ","shortMessageHtmlLink":"Stream json data to a file to save 30% of the memory. (#2510)"}},{"before":null,"after":"ecccb9e821ba856dba01bf34612e96aa0d0b4ffc","ref":"refs/heads/fix-bclconvert","pushedAt":"2024-04-27T11:32:04.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"bclconvert: fix for absent index reads","shortMessageHtmlLink":"bclconvert: fix for absent index reads"}},{"before":"196c9738f5d12549ef787f7f03b22af2c8e62113","after":"425b0d7ff0b22a8b6f45ca9b3f8243e9fb67d0f7","ref":"refs/heads/main","pushedAt":"2024-04-26T16:14:09.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Speed up all modules by tackling two performance bottlenecks (#2509)\n\n* Use a set rather than a list for membership checking in line plot\r\n\r\n* Cache spectra scale calls as these are expensive","shortMessageHtmlLink":"Speed up all modules by tackling two performance bottlenecks (#2509)"}},{"before":"3271222f7afa74d189d3c86e0bedbe9676623684","after":"d0b503784a06d6cf69968406c9a38a3abbf1e52e","ref":"refs/heads/interactive-use-2","pushedAt":"2024-04-26T16:06:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Do not return RunResult, plus fixes","shortMessageHtmlLink":"Do not return RunResult, plus fixes"}},{"before":"f4cdf1d44ae675d9a220d21a65f1f9ce7a6f5356","after":"3271222f7afa74d189d3c86e0bedbe9676623684","ref":"refs/heads/interactive-use-2","pushedAt":"2024-04-25T23:41:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Add warning about table keys header mismatch and update notebook","shortMessageHtmlLink":"Add warning about table keys header mismatch and update notebook"}},{"before":"11b942f395aba43223e6a563fb7d637ebe816a4a","after":"f4cdf1d44ae675d9a220d21a65f1f9ce7a6f5356","ref":"refs/heads/interactive-use-2","pushedAt":"2024-04-25T23:00:28.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Update notebook","shortMessageHtmlLink":"Update notebook"}},{"before":"aa91e693d87ca924728e18b2034020ffe0eccb02","after":"11b942f395aba43223e6a563fb7d637ebe816a4a","ref":"refs/heads/interactive-use-2","pushedAt":"2024-04-25T21:56:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Redundant soft_wrap option to Rich console (ignored, and crops if it worked anyway)","shortMessageHtmlLink":"Redundant soft_wrap option to Rich console (ignored, and crops if it …"}},{"before":"8a17d2b2f5c2692e57412916a3e9ab5452d9804e","after":"aa91e693d87ca924728e18b2034020ffe0eccb02","ref":"refs/heads/interactive-use-2","pushedAt":"2024-04-25T21:16:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Do not print emoji if unicode is not supported (fixes windows CI)","shortMessageHtmlLink":"Do not print emoji if unicode is not supported (fixes windows CI)"}},{"before":"4f3425657a3cbee60fd3c384ba984eae1692f757","after":"8a17d2b2f5c2692e57412916a3e9ab5452d9804e","ref":"refs/heads/interactive-use-2","pushedAt":"2024-04-25T20:21:11.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Use coloredlogs for PYCHARM_HOSTED and CI as it doesnt update the COLUMNS env var. Add line breaks to intro","shortMessageHtmlLink":"Use coloredlogs for PYCHARM_HOSTED and CI as it doesnt update the COL…"}},{"before":"d27294e300a7f7a35088b53cb9a8827913d72bff","after":"4f3425657a3cbee60fd3c384ba984eae1692f757","ref":"refs/heads/interactive-use-2","pushedAt":"2024-04-25T19:39:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Fix copy_fucntion_signature wrappers for older python","shortMessageHtmlLink":"Fix copy_fucntion_signature wrappers for older python"}},{"before":"9bddbf8f45b0b95485cf5e209e91aec72faa9f58","after":"d27294e300a7f7a35088b53cb9a8827913d72bff","ref":"refs/heads/interactive-use-2","pushedAt":"2024-04-25T19:33:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Test broken module","shortMessageHtmlLink":"Test broken module"}},{"before":"9d430823d369c047c047c30948ea01b9f93c08ea","after":"9bddbf8f45b0b95485cf5e209e91aec72faa9f58","ref":"refs/heads/interactive-use-2","pushedAt":"2024-04-25T19:32:29.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Do no clean up tmp dir within interactive session","shortMessageHtmlLink":"Do no clean up tmp dir within interactive session"}},{"before":"fa8408a7715b3ff280ced3f5631ba8512f9aad9b","after":"9d430823d369c047c047c30948ea01b9f93c08ea","ref":"refs/heads/interactive-use-2","pushedAt":"2024-04-25T18:52:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Fix ignoring samples","shortMessageHtmlLink":"Fix ignoring samples"}},{"before":"bd149c1a7261e6300a91ff7dbd25e25213b5a8ff","after":"fa8408a7715b3ff280ced3f5631ba8512f9aad9b","ref":"refs/heads/interactive-use-2","pushedAt":"2024-04-25T18:24:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Disable progress bar in CI","shortMessageHtmlLink":"Disable progress bar in CI"}},{"before":"df607dd4cc177f135cb704646011fb2d11eb3806","after":"bd149c1a7261e6300a91ff7dbd25e25213b5a8ff","ref":"refs/heads/interactive-use-2","pushedAt":"2024-04-25T18:11:24.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Update example notebook","shortMessageHtmlLink":"Update example notebook"}},{"before":"fc59eac1aa0ab908e5330fe2be48271e2b9f6ba0","after":"df607dd4cc177f135cb704646011fb2d11eb3806","ref":"refs/heads/interactive-use-2","pushedAt":"2024-04-25T18:00:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Try stderr=True for rich console","shortMessageHtmlLink":"Try stderr=True for rich console"}},{"before":"0d92c0c3addc269f646beb44303e2c1902de81c8","after":"fc59eac1aa0ab908e5330fe2be48271e2b9f6ba0","ref":"refs/heads/interactive-use-2","pushedAt":"2024-04-25T17:58:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Use logger params from config module instead of directly","shortMessageHtmlLink":"Use logger params from config module instead of directly"}},{"before":"f9029c48834f4349e7a95ca5cb350d7f44e1e9cd","after":"0d92c0c3addc269f646beb44303e2c1902de81c8","ref":"refs/heads/interactive-use-2","pushedAt":"2024-04-25T17:23:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Fix","shortMessageHtmlLink":"Fix"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEPiNwGgA","startCursor":null,"endCursor":null}},"title":"Activity · MultiQC/MultiQC"}