viroverse.conf

# Common configuration file for Viroverse. If you want to override the defaults,
# add them into a local file, viroverse_local.conf
#
# This file as well as viroverse_local.conf are in Config::General format
# (similar to ApacheConf) but any format supported by Perl's Config::Any
# interpreter will work, including JSON, YAML, or a Perl script, depending on
# the requirements of the local installation.
#
# Many of the defaults are configured at runtime; those settings are documented
# here but are commented out.

### NODE INFORMATION

# Instance name of the Viroverse server; defaults to $USERNAME-$HOSTNAME
#instance_name = vverse-localhost

# Whether to run in debug mode or not; defaults to the value of the $VVDEBUG
# environment variable, or 1 if unset
#debug = 1

### CONTACT INFORMATION

# The friendly sysadmin name
help_name = Viroverse Adminiatrator

# The email address to provide for support; defaults to $USERNAME@$HOSTNAME
#help_email = help@viroverse.example.edu

# The email address to send error reports to; defaults to $USERNAME@$HOSTNAME
#error_email = admins@viroverse.example.edu

### STORAGE

# Directory for local file storage; defaults to var/storage under the Viroverse
# installation directory
#storage = $ENV{VIROVERSE_ROOT}/var/storage

# Database connection information
dsn = dbi:Pg:host=127.0.0.1;dbname=viroverse;port=5432

# Read-only user
# Note: for best security practices, use pg_hba.conf to set system-level user
# authorization rather than using passwords; in any case, don't check passwords
# into source control.
read_only_user = viroverse_r
read_only_pw =

# Read-write user
read_write_user = viroverse_w
read_write_pw =

### VIROBLAST

# These defaults won't work unless var/viroblast is a checkout of
# ViroBLAST (or a symlink to one). ViroBLAST is available at
# https://els.comotion.uw.edu/express_license_technologies/viroblast
#blast_bin_path    = $ENV{VIROVERSE_ROOT}/var/viroblast/blast+/bin/
#blast_output_path = $ENV{VIROVERSE_ROOT}/var/viroblast/db/nucleotide/

### TEMPLATE OPTIONS

# TT2 template defaults
<template_defaults>
    # Preferred date format
    date_format = %Y-%m-%d

    # Maximum items to fetch into the product finder
    max_reults_json = 1200
</template_defaults>

# External executables
needle = /usr/local/bin/needle
quality = /usr/local/bin/quality

# Enabled optional features
<features>
    ice_cultures = 0
    epitopedb = 0
    isla_sequences = 0
    censor_dates = 0
    pacbio_sequencing = 0
</features>

# Redirect the root page to a specific view (e.g. /cohort/1)
redirect_root_to =