An introductory workshop to teach basic Python with a bioinformatics flavour.
This version was delivered at BioinfoSummer 2017.
Notebooks and associated data files are in notebooks, static HTML exported version are in docs.
There are currently two main modules:
- A basic introduction to the Python language (
01_Intro). - Running BLAST and parsing output, applied to a protein family (
02_Evasins).
Zero installation method: run the notebooks is to use mybinder.org
Alternatively, install Jupyter, run jupyter notebook in the repository directory.
You can run also run a Dockerized version locally like:
pip install jupyter-repo2docker
jupyter-repo2docker https://github.com/MonashBioinformaticsPlatform/intro-to-python-for-bioinformatics
To export all notebooks to HTML:
./build.sh
Creative Commons Attribution 4.0 International (CC BY 4.0) License., expect for images and trademarks that are copyright of their respective owners.