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Improvement: lineage tree information in default output #221

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elmbeech opened this issue Mar 9, 2024 · 1 comment
Open

Improvement: lineage tree information in default output #221

elmbeech opened this issue Mar 9, 2024 · 1 comment

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@elmbeech
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elmbeech commented Mar 9, 2024

the default PhysiCell output misses information to generate evolutionary lineage trees.
it would be good enough when each agent saves information about:

  • parent agent_id
  • simulation time of birth
  • simulation time of death

with this information, things like generation number or generation time can be derived downstream (in Python, R, Julia or whatever your favorite data analysis language flavor).

@elmbeech elmbeech changed the title lineage tree information in default output Improvement: lineage tree information in default output Mar 9, 2024
@elmbeech
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elmbeech commented Mar 9, 2024

physicell publications with lineage trees:

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