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Dockerfile
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Dockerfile
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FROM jupyter/base-notebook:8ccdfc1da8d5
USER root
RUN apt-get update && \
apt-get install -y --no-install-recommends \
build-essential=12.4ubuntu1 \
emacs \
git \
inkscape \
jed \
libsm6 \
libxext-dev \
libxrender1 \
lmodern \
netcat \
unzip \
nano \
curl \
wget \
gfortran \
cmake \
bsdtar \
rsync \
imagemagick \
gnuplot-x11 \
libopenblas-base \
octave \
liboctave-dev \
octave-info \
octave-parallel \
octave-struct \
octave-io \
octave-statistics \
octave-optim \
octave-image \
python3-dev \
ttf-dejavu && \
apt-get clean && \
apt-get autoremove && \
rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
RUN cd $HOME/work;\
pip install octave_kernel \
sos==0.17.7 \
sos-notebook==0.17.2 \
sos-python==0.9.12.1 \
sos-bash==0.12.3 \
sos-matlab==0.9.12.1 \
sos-ruby==0.9.15.0 \
sos-sas==0.9.12.3 \
sos-julia==0.9.12.1 \
sos-javascript==0.9.12.2 \
sos-r==0.9.12.2 \
scipy==1.1.0 \
plotly==4.4.1 \
plotly_express==0.4.1 \
nibabel==3.0.0 \
dash==1.6.1 \
dash_core_components==1.5.1 \
dash_html_components==1.0.2 \
dash_dangerously_set_inner_html \
dash-renderer==1.2.0 \
jupyter_plotly_dash==0.3.1 \
flask==1.0.2; \
python -m sos_notebook.install;\
git clone https://github.com/MartinaBoshkovska/b1_map.git; \
cd b1_map;\
git clone https://github.com/neuropoly/qMRLab.git; \
cd qMRLab; \
git checkout master; \
cd ..; \
chmod -R 777 $HOME/work/b1_map; \
octave --eval "cd qMRLab; \
startup; \
pkg list;"
WORKDIR $HOME/work/b1_map
USER $NB_UID