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Hi, These would be the steps:
If it would help, I could prepare such a notebook with a basic code scaffold to help you get started. Let me know! |
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I think query_idx is confusing because there is column named this in features and one in the peptide report and they mean something different in each. |
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Hi, Attached is a notebook with an example from MaxQuant - how this would, in principle, look like. This is not sanity-tested, so it could easily be that I made a plus instead of a minus somewhere :) During implementation, I noticed some things that could be critical for such an approach:
Hope this helps. |
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I'm wondering if its possible to use alphapept functions for feature detection and match-between-runs with a table of spectral matches generated by a different search engine? I would like to map my PSMs to alphapept generated features and then transfer to some other raw files, and would appreciate any pointers on how to implement this or whether it is more effort than it would be worth. Thanks.
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