You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Cell In[9], line 32, in format_uniprot_annotations(df, sep, regex)
28 # iterate proteins
29 for e,row in df.iterrows():
30
31 # iterate annotation types
---> 32 for t,a in row.iteritems():
33 try:
34 # skip empty strings
35 if str(a) in ["", "nan"]:
File ~\anaconda3\envs\prot_vis\lib\site-packages\pandas\core\generic.py:5989, in NDFrame.getattr(self, name)
5982 if (
5983 name not in self._internal_names_set
5984 and name not in self._metadata
5985 and name not in self._accessors
5986 and self._info_axis._can_hold_identifiers_and_holds_name(name)
5987 ):
5988 return self[name]
-> 5989 return object.getattribute(self, name)
AttributeError: 'Series' object has no attribute 'iteritems'
#then i cant run all the cells linked to the output "yeast_go"
fig 5
#from this part i was able to run the code until the "radar plot" section when trynging to execute this cell...
File ~\anaconda3\envs\prot_vis\lib\site-packages\pandas\core\generic.py:5989, in NDFrame.getattr(self, name)
5982 if (
5983 name not in self._internal_names_set
5984 and name not in self._metadata
5985 and name not in self._accessors
5986 and self._info_axis._can_hold_identifiers_and_holds_name(name)
5987 ):
5988 return self[name]
-> 5989 return object.getattribute(self, name)
AttributeError: 'Series' object has no attribute 'stack'
thank you
joaquin
The text was updated successfully, but these errors were encountered:
Hi, julia
I send you the errors that I get when running the code
fig 4
first error in this cell of the section Read yeast go annotations downloaded from Uniprot:
yeast_go = format_uniprot_annotations(yeast_go)
yeast_go
AttributeError Traceback (most recent call last)
Cell In[13], line 1
----> 1 yeast_go = format_uniprot_annotations(yeast_go)
2 yeast_go
Cell In[9], line 32, in format_uniprot_annotations(df, sep, regex)
28 # iterate proteins
29 for e,row in df.iterrows():
30
31 # iterate annotation types
---> 32 for t,a in row.iteritems():
33 try:
34 # skip empty strings
35 if str(a) in ["", "nan"]:
File ~\anaconda3\envs\prot_vis\lib\site-packages\pandas\core\generic.py:5989, in NDFrame.getattr(self, name)
5982 if (
5983 name not in self._internal_names_set
5984 and name not in self._metadata
5985 and name not in self._accessors
5986 and self._info_axis._can_hold_identifiers_and_holds_name(name)
5987 ):
5988 return self[name]
-> 5989 return object.getattribute(self, name)
AttributeError: 'Series' object has no attribute 'iteritems'
#then i cant run all the cells linked to the output "yeast_go"
fig 5
#from this part i was able to run the code until the "radar plot" section when trynging to execute this cell...
fig_radar = px.line_polar(ap4_av_profiles.stack("Fraction").reset_index().rename({0: "value"}, axis=1),
r="value", theta="Fraction", line_group="Compartment", line_close=True,
color="Compartment", color_discrete_sequence=px.colors.qualitative.D3)
.update_layout(width=500, height=230, font_size=8, margin=dict(t=20, b=0, r=0, l=20), template="simple_white")
.update_polars(radialaxis=dict(showgrid=True, gridcolor="darkgrey"),
angularaxis=dict(showgrid=True, gridcolor="darkgrey"))
fig_radar
AttributeError Traceback (most recent call last)
Cell In[30], line 1
----> 1 fig_radar = px.line_polar(ap4_av_profiles.stack("Fraction").reset_index().rename({0: "value"}, axis=1),
2 r="value", theta="Fraction", line_group="Compartment", line_close=True,
3 color="Compartment", color_discrete_sequence=px.colors.qualitative.D3)
4 .update_layout(width=500, height=230, font_size=8, margin=dict(t=20, b=0, r=0, l=20), template="simple_white")
5 .update_polars(radialaxis=dict(showgrid=True, gridcolor="darkgrey"),
6 angularaxis=dict(showgrid=True, gridcolor="darkgrey"))
7 fig_radar
File ~\anaconda3\envs\prot_vis\lib\site-packages\pandas\core\generic.py:5989, in NDFrame.getattr(self, name)
5982 if (
5983 name not in self._internal_names_set
5984 and name not in self._metadata
5985 and name not in self._accessors
5986 and self._info_axis._can_hold_identifiers_and_holds_name(name)
5987 ):
5988 return self[name]
-> 5989 return object.getattribute(self, name)
AttributeError: 'Series' object has no attribute 'stack'
thank you
joaquin
The text was updated successfully, but these errors were encountered: