Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Question regarding multichannel names #2187

Open
unrpi18 opened this issue May 15, 2024 · 1 comment
Open

Question regarding multichannel names #2187

unrpi18 opened this issue May 15, 2024 · 1 comment
Assignees

Comments

@unrpi18
Copy link

unrpi18 commented May 15, 2024

image

the dataset.json is:

"channel_names": {
"0": "CT",
"1": "CT"
},

Why is the above error reported for my image names xxxx.001.0000.nii.gz and xxxx.001.0001.nill.gz while I using the command nnUNetv2_plan_and_preprocess -d 001 -pl nnUNetPlannerResEncL ?

I'm currently using a macOS M3 chip, but I'm getting the same error with windows.

@TaWald
Copy link
Contributor

TaWald commented Jun 4, 2024

Your dataset format seems off. you should separate with an underscore "_" and not a dot "."

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants