Model Information

Model Information (Optional)

Each model can contain a name, description, creation date information, creation commands, author, numerical attribute or range. Any of the categories are optional.

If a numerical attribute is assigned, a model function may be defined to choose the model based on the numerical attribute or Upper and Lower range.

###Format MODEL INFORMATION

NAME: VALUE DESCRIPTION: VALUE CREATION_DATE: VALUE CREATION_COMMAND: VALUE AUTHOR: VALUE NUM_ATTRIB: VALUE UPPER: VALUE LOWER: VALUE

NAME => Name of the model  
DESCRIPTION => Description of the model  
CREATION_DATE => Date that the model was created  
CREATION_COMMAND => Command or script used to create the model  
AUTHOR => Who created the model  
NUM_ATTRIB => Numerical value associated with the model.   When using multiple models, StochHMM could select the model based on the value associated with the model.  For example, if you have multiple models trained for sequences with different GC percentages.  StochHMM could select the model based on the GC percentage of the sequence.  
UPPER =>  Range value, similar to NUM_ATTRIB except defines the inclusive upper range of values associated with the model.  *If used LOWER must also be supplied.*  
LOWER =>  Range value, similar to NUM_ATTRIB except defines the inclusive lower range of values associated ith the model.  *If used UPPER must also be supplied.*  

###Example

#STOCHHMM MODEL FILE

MODEL INFORMATION

NAME: Simplified Human Gene DESCRIPTION: Created using perl script CREATION_DATE: August 12,2009 CREATION_COMMAND: ./creation_script.pl fasta.fa.... AUTHOR: Paul Lott NUM_ATTRIB: 20 UPPER: 29 LOWER: 20