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Docker image in kubernetes cluster issue #17

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karegapauline opened this issue Aug 2, 2023 · 1 comment
Open

Docker image in kubernetes cluster issue #17

karegapauline opened this issue Aug 2, 2023 · 1 comment

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@karegapauline
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I am trying to use the latest docker image quay.io/biocontainers/naf:1.3.0--hec16e2b_3 to compress and decompress within a nextflow pipeline. I am running the pipeline in a Kubernetes cluster and I keep getting the error: Illegal instruction (core dumped), and terminated with an error exit status (132).

The commands I am running are:

compress

mkdir mytemp
ennaf -o GSM461177_1.trimmed.naf --temp-dir mytemp GSM461177_1.fastqsanger

I've also tried to build my own image and this works locally, but throws the same error when run in the cluster.
Could you assist.

Thanks

@KirillKryukov
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Sorry, no idea what might be wrong. I don't use Kubernetes, but if you'll figure out a way to reproduce it locally, I'll take a look. Also please post if you'll have any additional related findings or observations.

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