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Hello, I am new to the scDamAndTools. I am following the tutorial given on the repository. So, I am using the generate_celseq_counts.py for generating UMI-unique transcript counts. I have my reference genome index files, GTF file and the aligned .bam files which creates a count file correctly. I also want to save the count statistics and the --save-stats argument allows one to do that. However, after running the script, it does not generate a stats tsv file for me. I have checked, my version of scDamAndTools does support the --save-stats argument. I tried giving a file name for saving the stats but it doesn't allow that.
Any help would be appreciated.
The text was updated successfully, but these errors were encountered:
Hello, I am new to the scDamAndTools. I am following the tutorial given on the repository. So, I am using the
generate_celseq_counts.py
for generating UMI-unique transcript counts. I have my reference genome index files, GTF file and the aligned .bam files which creates a count file correctly. I also want to save the count statistics and the--save-stats
argument allows one to do that. However, after running the script, it does not generate a stats tsv file for me. I have checked, my version of scDamAndTools does support the--save-stats
argument. I tried giving a file name for saving the stats but it doesn't allow that.Any help would be appreciated.
The text was updated successfully, but these errors were encountered: