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environment.yml
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environment.yml
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name: sam_adapt
channels:
- pytorch
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=5.1=1_gnu
- abseil-cpp=20211102.0=hd4dd3e8_0
- absl-py=1.3.0=py310h06a4308_0
- aiohttp=3.8.3=py310h5eee18b_0
- async-timeout=4.0.2=py310h06a4308_0
- attrs=22.1.0=py310h06a4308_0
- blas=1.0=mkl
- blosc=1.21.3=h6a678d5_0
- bottleneck=1.3.5=py310ha9d4c09_0
- brotli=1.0.9=h5eee18b_7
- brotli-bin=1.0.9=h5eee18b_7
- brotlipy=0.7.0=py310h7f8727e_1002
- brunsli=0.1=h2531618_0
- bzip2=1.0.8=h7b6447c_0
- c-ares=1.19.0=h5eee18b_0
- ca-certificates=2023.11.17=hbcca054_0
- cffi=1.15.1=py310h5eee18b_3
- cfitsio=3.470=h5893167_7
- charls=2.2.0=h2531618_0
- cloudpickle=2.2.1=py310h06a4308_0
- comm=0.1.4=pyhd8ed1ab_0
- contourpy=1.0.5=py310hdb19cb5_0
- cpuonly=2.0=0
- cryptography=39.0.1=py310h9ce1e76_0
- cudatoolkit=11.3.1=h2bc3f7f_2
- cytoolz=0.12.0=py310h5eee18b_0
- dask-core=2023.4.1=py310h06a4308_0
- dbus=1.13.18=hb2f20db_0
- debugpy=1.6.7=py310h6a678d5_0
- decorator=5.1.1=pyhd8ed1ab_0
- expat=2.4.9=h6a678d5_0
- ffmpeg=4.3=hf484d3e_0
- fontconfig=2.14.1=h4c34cd2_2
- freetype=2.12.1=h4a9f257_0
- frozenlist=1.3.3=py310h5eee18b_0
- fsspec=2023.4.0=py310h06a4308_0
- giflib=5.2.1=h5eee18b_3
- glib=2.69.1=he621ea3_2
- gmp=6.2.1=h295c915_3
- gnutls=3.6.15=he1e5248_0
- grpc-cpp=1.48.2=h5bf31a4_0
- grpcio=1.48.2=py310h5bf31a4_0
- gst-plugins-base=1.14.1=h6a678d5_1
- gstreamer=1.14.1=h5eee18b_1
- icu=58.2=he6710b0_3
- idna=3.4=py310h06a4308_0
- imagecodecs=2021.8.26=py310h46e8fbd_2
- imageio=2.26.0=py310h06a4308_0
- importlib-metadata=6.0.0=py310h06a4308_0
- importlib_metadata=6.0.0=hd8ed1ab_0
- intel-openmp=2021.4.0=h06a4308_3561
- ipykernel=6.26.0=pyhf8b6a83_0
- joblib=1.1.1=py310h06a4308_0
- jpeg=9e=h5eee18b_1
- jupyter_client=8.6.0=pyhd8ed1ab_0
- jupyter_core=5.5.0=py310hff52083_0
- jxrlib=1.1=h7b6447c_2
- kiwisolver=1.4.4=py310h6a678d5_0
- krb5=1.19.4=h568e23c_0
- lame=3.100=h7b6447c_0
- lazy_loader=0.1=py310h06a4308_0
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.38=h1181459_1
- lerc=3.0=h295c915_0
- libaec=1.0.4=he6710b0_1
- libbrotlicommon=1.0.9=h5eee18b_7
- libbrotlidec=1.0.9=h5eee18b_7
- libbrotlienc=1.0.9=h5eee18b_7
- libclang=14.0.6=default_hc6dbbc7_1
- libclang13=14.0.6=default_he11475f_1
- libcurl=7.88.1=h91b91d3_0
- libdeflate=1.17=h5eee18b_0
- libedit=3.1.20221030=h5eee18b_0
- libev=4.33=h7f8727e_1
- libevent=2.1.12=h8f2d780_0
- libffi=3.4.2=h6a678d5_6
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=11.2.0=h1234567_1
- libgfortran-ng=11.2.0=h00389a5_1
- libgfortran5=11.2.0=h1234567_1
- libgomp=11.2.0=h1234567_1
- libiconv=1.16=h7f8727e_2
- libidn2=2.3.2=h7f8727e_0
- libllvm14=14.0.6=hdb19cb5_2
- libnghttp2=1.46.0=hce63b2e_0
- libpng=1.6.39=h5eee18b_0
- libpq=12.9=h16c4e8d_3
- libprotobuf=3.20.3=he621ea3_0
- libsodium=1.0.18=h36c2ea0_1
- libssh2=1.10.0=h8f2d780_0
- libstdcxx-ng=11.2.0=h1234567_1
- libtasn1=4.19.0=h5eee18b_0
- libtiff=4.5.0=h6a678d5_2
- libunistring=0.9.10=h27cfd23_0
- libuuid=1.41.5=h5eee18b_0
- libwebp=1.2.4=h11a3e52_1
- libwebp-base=1.2.4=h5eee18b_1
- libxcb=1.15=h7f8727e_0
- libxkbcommon=1.0.1=h5eee18b_1
- libxml2=2.10.3=hcbfbd50_0
- libxslt=1.1.37=h2085143_0
- libzopfli=1.0.3=he6710b0_0
- locket=1.0.0=py310h06a4308_0
- lz4-c=1.9.4=h6a678d5_0
- markdown=3.4.1=py310h06a4308_0
- markupsafe=2.1.1=py310h7f8727e_0
- matplotlib=3.7.1=py310h06a4308_1
- matplotlib-base=3.7.1=py310h1128e8f_1
- matplotlib-inline=0.1.6=pyhd8ed1ab_0
- mkl=2021.4.0=h06a4308_640
- mkl-service=2.4.0=py310h7f8727e_0
- mkl_fft=1.3.1=py310hd6ae3a3_0
- mkl_random=1.2.2=py310h00e6091_0
- monai=1.1.0=pyhd8ed1ab_0
- multidict=6.0.2=py310h5eee18b_0
- munkres=1.1.4=pyh9f0ad1d_0
- ncurses=6.4=h6a678d5_0
- nest-asyncio=1.5.8=pyhd8ed1ab_0
- nettle=3.7.3=hbbd107a_1
- networkx=2.8.4=py310h06a4308_1
- nspr=4.33=h295c915_0
- nss=3.74=h0370c37_0
- numexpr=2.8.4=py310h8879344_0
- numpy=1.24.3=py310hd5efca6_0
- numpy-base=1.24.3=py310h8e6c178_0
- oauthlib=3.2.2=py310h06a4308_0
- openh264=2.1.1=h4ff587b_0
- openjpeg=2.4.0=h3ad879b_0
- openssl=1.1.1w=h7f8727e_0
- packaging=23.0=py310h06a4308_0
- pandas=1.5.3=py310h1128e8f_0
- parso=0.8.3=pyhd8ed1ab_0
- pcre=8.45=h295c915_0
- pexpect=4.8.0=pyh1a96a4e_2
- pickleshare=0.7.5=py_1003
- pillow=9.4.0=py310h6a678d5_0
- pip=23.0.1=py310h06a4308_0
- platformdirs=4.1.0=pyhd8ed1ab_0
- ply=3.11=py310h06a4308_0
- protobuf=3.20.3=py310h6a678d5_0
- ptyprocess=0.7.0=pyhd3deb0d_0
- pure_eval=0.2.2=pyhd8ed1ab_0
- pycparser=2.21=pyhd8ed1ab_0
- pyjwt=2.4.0=py310h06a4308_0
- pyopenssl=23.0.0=py310h06a4308_0
- pyparsing=3.0.9=py310h06a4308_0
- pyqt=5.15.7=py310h6a678d5_1
- pysocks=1.7.1=py310h06a4308_0
- python=3.10.11=h7a1cb2a_2
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python_abi=3.10=2_cp310
- pytorch-mutex=1.0=cpu
- pytz=2022.7=py310h06a4308_0
- pyu2f=0.1.5=pyhd8ed1ab_0
- pywavelets=1.4.1=py310h5eee18b_0
- pyyaml=6.0=py310h5eee18b_1
- pyzmq=23.0.0=py310h330234f_0
- qt-main=5.15.2=h8373d8f_8
- qt-webengine=5.15.9=hbbf29b9_6
- qtwebkit=5.212=h3fafdc1_5
- re2=2022.04.01=h295c915_0
- readline=8.2=h5eee18b_0
- requests=2.29.0=py310h06a4308_0
- scikit-image=0.20.0=py310h6a678d5_0
- scikit-learn=1.2.2=py310h6a678d5_0
- scipy=1.10.1=py310hd5efca6_0
- seaborn=0.12.2=py310h06a4308_0
- setuptools=66.0.0=py310h06a4308_0
- sip=6.6.2=py310h6a678d5_0
- six=1.16.0=pyh6c4a22f_0
- snappy=1.1.9=h295c915_0
- sqlite=3.41.2=h5eee18b_0
- stack_data=0.6.2=pyhd8ed1ab_0
- tensorboard=2.11.0=py310h06a4308_0
- tensorboard-data-server=0.6.1=py310h52d8a92_0
- tensorboard-plugin-wit=1.8.1=py310h06a4308_0
- tk=8.6.12=h1ccaba5_0
- toml=0.10.2=pyhd8ed1ab_0
- toolz=0.12.0=py310h06a4308_0
- torchaudio=0.12.1=py310_cpu
- tornado=6.2=py310h5eee18b_0
- tqdm=4.65.0=py310h2f386ee_0
- typing_extensions=4.5.0=py310h06a4308_0
- tzdata=2023c=h04d1e81_0
- unicodedata2=14.0.0=py310h5764c6d_1
- urllib3=1.26.15=py310h06a4308_0
- wheel=0.38.4=py310h06a4308_0
- xz=5.4.2=h5eee18b_0
- yaml=0.2.5=h7b6447c_0
- yarl=1.8.1=py310h5eee18b_0
- zeromq=4.3.4=h9c3ff4c_1
- zfp=0.5.5=h295c915_6
- zipp=3.11.0=py310h06a4308_0
- zlib=1.2.13=h5eee18b_0
- zstd=1.5.5=hc292b87_0
- pip:
- aiosignal==1.2.0
- alembic==1.10.4
- appdirs==1.4.4
- astor==0.8.1
- asttokens==2.2.1
- backcall==0.2.0
- beautifulsoup4==4.12.2
- blinker==1.6.2
- cachetools==4.2.2
- certifi==2022.12.7
- charset-normalizer==2.0.4
- click==8.1.3
- cmaes==0.9.1
- colorama==0.4.6
- colorlog==6.7.0
- contextlib2==21.6.0
- coverage==6.5.0
- coveralls==3.3.1
- cucim==23.4.1
- cycler==0.11.0
- databricks-cli==0.17.7
- docker==6.1.1
- docopt==0.6.2
- einops==0.6.1
- entrypoints==0.4
- exceptiongroup==1.1.1
- executing==1.2.0
- filelock==3.12.0
- fire==0.5.0
- flask==2.3.2
- fonttools==4.25.0
- future==0.18.3
- gdown==4.7.1
- gitdb==4.0.10
- gitpython==3.1.31
- google-auth==2.6.0
- google-auth-oauthlib==0.4.4
- greenlet==2.0.2
- gunicorn==20.1.0
- h5py==3.8.0
- huggingface-hub==0.14.1
- iniconfig==2.0.0
- ipython==8.13.1
- itk==5.3.0
- itk-core==5.3.0
- itk-filtering==5.3.0
- itk-io==5.3.0
- itk-numerics==5.3.0
- itk-registration==5.3.0
- itk-segmentation==5.3.0
- itsdangerous==2.1.2
- jedi==0.18.2
- jinja2==3.1.2
- json-tricks==3.16.1
- jsonschema==4.17.3
- kornia==0.4.1
- lmdb==1.4.1
- lucent==0.1.0
- mako==1.2.4
- mlflow==2.3.1
- nibabel==5.1.0
- ninja==1.11.1
- nni==2.10
- nptyping==2.5.0
- opencv-python==4.7.0.72
- openslide-python==1.1.2
- optuna==3.1.1
- partd==1.2.0
- pluggy==1.0.0
- pooch==1.4.0
- prettytable==3.7.0
- prompt-toolkit==3.0.38
- psutil==5.9.5
- pyarrow==11.0.0
- pyasn1==0.4.8
- pyasn1-modules==0.2.8
- pydicom==2.3.1
- pygments==2.15.1
- pynrrd==1.0.0
- pyqt5-sip==12.11.0
- pyrsistent==0.19.3
- pytest==7.3.1
- pytest-mock==3.10.0
- pythonwebhdfs==0.2.3
- pytorch-ignite==0.4.10
- querystring-parser==1.2.4
- regex==2023.5.5
- requests-oauthlib==1.3.0
- responses==0.23.1
- rsa==4.7.2
- safetensors==0.4.1
- schema==0.7.5
- simplejson==3.19.1
- smmap==5.0.0
- soupsieve==2.4.1
- sqlalchemy==2.0.12
- sqlparse==0.4.4
- tabulate==0.9.0
- tensorboardx==2.2
- termcolor==2.3.0
- threadpoolctl==2.2.0
- tifffile==2021.7.2
- timm==0.9.12
- tokenizers==0.12.1
- tomli==2.0.1
- torch==1.12.1+cu113
- torch-lucent==0.1.8
- torchvision==0.13.1+cu113
- traitlets==5.9.0
- transformers==4.21.3
- typeguard==3.0.2
- types-pyyaml==6.0.12.9
- wcwidth==0.2.6
- websocket-client==1.5.1
- websockets==11.0.3
- werkzeug==2.3.4