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Error on building 'PyCall' argument not expected: --satisfied-skip-solve #1066

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Cglezf opened this issue Dec 12, 2023 · 1 comment
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@Cglezf
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Cglezf commented Dec 12, 2023

Julia can't build and precompile some packages as PyCall.jl The problem is produced in the build process when force the argument when set the root environment with conda install -y --satisfied-skip-solve numpy when the version of conda/mamba do not accept this argument.

It could solve by make false the "satisfied_skip_solve" or simply take off the argument (if do not want to use other verification)

use_conda = dirname(python) == abspath(Conda.PYTHONDIR) if use_conda Conda.add("numpy";satisfied_skip_solve=true )end

On Mac OSX Sonoma 14.2 apple chip M2
Julia 1.9.3, Python 3.12 and Mamba(Conda)

julia> Pkg.build("PyCall"); Pkg.precompile() Building Conda ─→ /opt/mamba/envs/mcd/share/julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8c86e48c0db1564a1d49548d3515ced5d604c408/build.logBuilding PyCall →/opt/mamba/envs/mcd/share/julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/43d304ac6f0354755f1d60730ece8c499980f7ba/build.logERROR: Error buildingPyCall: The following argument was not expected: --satisfied-skip-solve Run with --help for more information. [ Info: Running conda install -y --satisfied-skip-solve numpy in root environment ERROR: LoadError: failed process: Process(setenv(/opt/homebrew/opt/micromamba/bin/micromamba install -y --satisfied-skip-solve numpy`,["FC_FOR_BUILD=/opt/mamba/envs/mcd/bin/x86_64-apple-darwin13.4.0-gfortran", "LSCOLORS=Gxfxcxdxbxegedabagacad", "PATH=/opt/mamba/envs/mcd/bin:/opt/mamba/condabin:/opt/homebrew/bin:/opt/homebrew/sbin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin:/Applications/quarto/bin:/opt/homebrew/var/homebrew/linked", "CXX=x86_64-apple-darwin13.4.0-clang++", "DENO_DOM_VERSION=0.1.35-alpha", "F95=/opt/mamba/envs/mcd/bin/x86_64-apple-darwin13.4.0-gfortran", "CC=x86_64-apple-darwin13.4.0-clang", "CXXFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -isystem /opt/mamba/envs/mcd/include", "OTOOL=x86_64-apple-darwin13.4.0-otool", "DEBUG_CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -Og -g -Wall -Wextra -isystem /opt/mamba/envs/mcd/include" … "TERM_SESSION_ID=E9F5F9AB-DC24-46BA-85CF-5C439346566B", "ac_cv_func_realloc_0_nonnull=yes", "BUILD=x86_64-apple-darwin13.4.0", "QUARTO_DENO=/opt/mamba/envs/mcd/bin/deno", "JULIA_LOAD_PATH=@:/var/folders/75/ftt9_lrn0292knych8n_rsgw0000gn/T/jl_KuLfDj", "DEBUG_CXXFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -Og -g -Wall -Wextra -isystem /opt/mamba/envs/mcd/include", "ac_cv_func_malloc_0_nonnull=yes", "MAMBA_ROOT_PREFIX=/opt/mamba", "LS_COLORS=di=1;36:ln=35:so=32:pi=33:ex=31:bd=34;46:cd=34;43:su=30;41:sg=30;46:tw=30;42:ow=30;43", "OPENBLAS_MAIN_FREE=1"]), ProcessExited(109)) [109]

Stacktrace:
[1] pipeline_error
@ ./process.jl:565 [inlined]
[2] run(::Cmd; wait::Bool)
@ Base ./process.jl:480
[3] run
@ ./process.jl:477 [inlined]
[4] runconda(args::Cmd, env::String)
@ Conda /opt/mamba/envs/mcd/share/julia/packages/Conda/2lg2O/src/Conda.jl:128
[5] add(pkg::String, env::String; channel::String, satisfied_skip_solve::Bool, args::Cmd)
@ Conda /opt/mamba/envs/mcd/share/julia/packages/Conda/2lg2O/src/Conda.jl:256
[6] add
@ /opt/mamba/envs/mcd/share/julia/packages/Conda/2lg2O/src/Conda.jl:239 [inlined]
[7] top-level scope
@ /opt/mamba/envs/mcd/share/julia/packages/PyCall/ilqDX/deps/build.jl:79
[8] include(fname::String)
@ Base.MainInclude ./client.jl:478
[9] top-level scope
@ none:5
in expression starting at /opt/mamba/envs/mcd/share/julia/packages/PyCall/ilqDX/deps/build.jl:43
Stacktrace:
[1] pkgerror(msg::String)
@ Pkg.Types /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/Types.jl:69
[2] (::Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String})()
@ Pkg.Operations /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/Operations.jl:1153
[3] withenv(::Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, ::Pair{String, String}, ::Vararg{Pair{String}})
@ Base ./env.jl:197
[4] (::Pkg.Operations.var"#117#122"{String, Bool, Bool, Bool, Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, Pkg.Types.PackageSpec})()
@ Pkg.Operations /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/Operations.jl:1827
[5] with_temp_env(fn::Pkg.Operations.var"#117#122"{String, Bool, Bool, Bool, Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, Pkg.Types.PackageSpec}, temp_env::String)
@ Pkg.Operations /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/Operations.jl:1701
[6] (::Pkg.Operations.var"#115#120"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, Pkg.Types.Project, String})(tmp::String)
@ Pkg.Operations /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/Operations.jl:1790
[7] mktempdir(fn::Pkg.Operations.var"#115#120"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, Pkg.Types.Project, String}, parent::String; prefix::String)
@ Base.Filesystem ./file.jl:760
[8] mktempdir(fn::Function, parent::String)
@ Base.Filesystem ./file.jl:756
[9] mktempdir
@ ./file.jl:756 [inlined]
[10] sandbox(fn::Function, ctx::Pkg.Types.Context, target::Pkg.Types.PackageSpec, target_path::String, sandbox_path::String, sandbox_project_override::Pkg.Types.Project; preferences::Dict{String, Any}, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
@ Pkg.Operations /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/Operations.jl:1748
[11] build_versions(ctx::Pkg.Types.Context, uuids::Set{Base.UUID}; verbose::Bool)
@ Pkg.Operations /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/Operations.jl:1134
[12] build_versions
@ /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/Operations.jl:1049 [inlined]
[13] build(ctx::Pkg.Types.Context, uuids::Set{Base.UUID}, verbose::Bool)
@ Pkg.Operations /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/Operations.jl:991
[14] build(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; verbose::Bool, kwargs::Base.Pairs{Symbol, Base.TTY, Tuple{Symbol}, NamedTuple{(:io,), Tuple{Base.TTY}}})
@ Pkg.API /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/API.jl:1053
[15] build(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.TTY, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/API.jl:156
[16] build(pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.API /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/API.jl:145
[17] #build#85
@ /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/API.jl:144 [inlined]
[18] build
@ /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/API.jl:144 [inlined]
[19] #build#84
@ /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/API.jl:143 [inlined]
[20] build(pkg::String)
@ Pkg.API /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/API.jl:143
[21] top-level scope
@ REPL[46]:1

`

@Cglezf
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Cglezf commented Dec 15, 2023

The code is deps/build.jl line 79

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