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Remove dependency on OTU picking #82

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JTFouquier opened this issue Mar 15, 2018 · 2 comments
Open

Remove dependency on OTU picking #82

JTFouquier opened this issue Mar 15, 2018 · 2 comments
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@JTFouquier
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Qiime2 does not require OTU picking as research has evolved/improved.

Remove the dependency/requirement of an OTU map as an input to ghost-tree. Consider making it an option.

Revisit Jai and Evan's comments on Qiime2 forum and Github about this. See my notes about Q2 development for more information.
@JTFouquier
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I'm still undecided on this. I think there are a lot of benefits to using the otu map. Need to think about it.

@JTFouquier
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Consider using/parsing VSEARCH. Also need to add my own check for OtuMap

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@JTFouquier