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Trying to print sequence when we mean contig name #176

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adamnovak opened this issue Apr 19, 2023 · 0 comments
Open

Trying to print sequence when we mean contig name #176

adamnovak opened this issue Apr 19, 2023 · 0 comments

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@adamnovak
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hap.py/src/c++/lib/align/RefVar.cpp

Line 339 in 79de3c7

error("Cannot query reference sequence at %s:%i-%i", ref.c_str(), minpos, maxpos);

The ref here is supposed to be the extracted sequence itself; chr is the contig name and I think what was really meant to be printed.
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@adamnovak