Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

drift of average value of noisy realizations #11

Open
jeanollion opened this issue Mar 1, 2024 · 0 comments
Open

drift of average value of noisy realizations #11

jeanollion opened this issue Mar 1, 2024 · 0 comments

Comments

@jeanollion
Copy link

Hello,
I have notice what seems to be a drift in the average values of the different images of a given FOV.
For a given FOV f, let GT_f be the average of the 400 noisy images I_f_i the drift in average value is D_f_i = | mean(GT_f) - mean(I_f_i) |
For channel 1, among all FOV: max_f(max_i(D_f_i)) = 17.8 and mean_f(mean_i(D_f_i))=1.14 when the average signal is 138.8 .
This induces a bias in computation of GT and makes the noise non-centered (I provide below the mean values of the noise N_f=I_f_249 - GT_f for each FOV of channel 1 ).
I'm working with the raw images.

In my case this impacts metrics of denoising methods.
Have you observed this issues, and do you have a standard correction for this ?
Thanks in advance.
Jean Ollion

noise mean for each FOV: [-0.8317243, 1.2392317, -4.208956, -3.358546, -4.2604985, 3.303461, -1.4710585, -0.2814204, 0.2828135, -0.449574, 2.147688, -1.1022385, -0.1850455, 0.5989662, 0.9377363, 0.5326594, 0.6375745, 1.7398707, 0.7471948, 0.2714147, 1.9833765, 0.19572908, 2.6688302, -2.2421582, -0.28200242, 0.08040069, 1.4105449, 1.1168568, -1.3297158, 1.0243058, 0.95828694, 1.2252651, -1.2509149, -0.24397486, 2.5610054, 1.8038473, 1.2389781, 0.62126774, 1.1971412, 1.1800888, -0.48276165, -2.0858142, -2.523765, 0.78499997, 3.0807197, 0.26181412, -1.2044606, 1.5227144, 0.14979905, 1.0882232, 0.13115424, -0.071832456, -0.15642868, -0.43484783, -0.6926114, -0.9822405, 1.15292, 0.45529222, 0.89752686, 0.009188991, -0.08303383, -2.2161212, 0.121987365, 0.3015615, 0.15540993, -4.771824, 0.23881689, -4.0210414, -0.7691488, -0.28321892, -1.5681504, -0.37152502, 2.7180696, 1.4099203, -2.3630157, -2.3754416, -1.2403578, 3.026292, -0.77643365, -2.202843, 2.1636384, 2.2502825, 2.3571348, 1.0598212, 0.017560417, -0.40768188, -0.6890089, -3.614546, 1.155397, 0.96262175, -0.68197405, 2.822749, -1.321134, -2.2414024, 0.031902194, -1.0697134, -0.20994323, 0.6897445, 1.9160875, -1.3230332, 3.8062916, 2.4175704, -0.46756917, 1.4648752, -0.018905409, -1.3221332, -0.31314403, 0.6417094, 1.1749882, 1.0345253, -0.87445986, 1.1762475, 3.9479492, -0.4438193, 0.064207785, -0.023243299, 0.07688828, 0.74707925, 0.8759693, -0.26784295] 
 mean=0.1133490651845932 std=1.6563199758529663
@jeanollion jeanollion changed the title issue with issue with average value of noisy realizations Mar 1, 2024
@jeanollion jeanollion changed the title issue with average value of noisy realizations drift of average value of noisy realizations Mar 1, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant