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ISATAB serialization: effect of presence/absence to "Term Source REF" "Term Accession" on parsing #515

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proccaserra opened this issue Dec 18, 2023 · 0 comments
Open

ISATAB serialization: effect of presence/absence to "Term Source REF" "Term Accession" on parsing #515

proccaserra opened this issue Dec 18, 2023 · 0 comments
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Source Name | Characteristics | Sample Name
and
Source Name | Characteristics | Term Accession Number | Term Source REF | Sample Name

  • Will be serialised differently in JSON with characteristics.value being output as str() or OntologyAnnotation() respectively.
  • Affects round-tripping expectations

Documentation is needed to fully qualify this aspect and good practices for producing ISA-Tab (ISA JSON) documents.
@proccaserra proccaserra self-assigned this Dec 18, 2023
@proccaserra proccaserra added this to To do in ISA Tools Development via automation Dec 18, 2023
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