Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Unable to install isatools due to PyYAML build failure #498

Open
JeremyLeland opened this issue Jul 26, 2023 · 4 comments · May be fixed by #505
Open

Unable to install isatools due to PyYAML build failure #498

JeremyLeland opened this issue Jul 26, 2023 · 4 comments · May be fixed by #505

Comments

@JeremyLeland
Copy link

I tried installing isatools today via pip and hit build errors in the PyYAML dependency.

I'm seeing many apps that use PyYAML breaking recently after a new release of Cython, see: yaml/pyyaml#601. It looks like a temporary fix for this was released as PyYAML 6.0.1: yaml/pyyaml#702

This project is explicitly depending on PyYAML~=5.4.1. Is the project able to use PyYAML 6.0.1?
@jake-emerson
Copy link

Another (temporary) option is to allow PyYAML version 5.3.1. See: yaml/pyyaml#601 (comment)

@jlbales
Copy link

jlbales commented Oct 2, 2023

I am also having this issue. Is there a workaround for this?

@jake-emerson
Copy link

Hi all. Same issue here. Moving back to 5.3.1 does seem to work, but also has a security issue: https://security.snyk.io/vuln/SNYK-PYTHON-PYYAML-590151.

@proccaserra
Copy link
Member

Hi all, apologies to the delay.
fixed in master
will work on a release asap

@proccaserra proccaserra linked a pull request Oct 23, 2023 that will close this issue
Open
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging a pull request may close this issue.

Develop ISA-tools/isa-api
4 participants
@proccaserra @jlbales @JeremyLeland @jake-emerson