- request: Do not write file if gene not found (
1e503ff)
- gtex_request will no longer always output a file. If the passed geneID does not begin with "ENSG", a warning will be logged and the request skipped. This designed to be used with snakemake checkpoints to allow unknown variable number of genes. (
1e503ff)
- multithreading: Document refactored _get_session function (
f11db33)
- biomart: Change input to filename (
25021bb)
- gtexquery.data_handling.biomart.biomart_request now requires its first parameter to be a string. (
25021bb)
- sphinx: Udate to include new module (
602e65a)
- data_handling: Change process output to csv (
98f6225)
- Real-world tests showed that it was quite challenging, if not impossible, to create two excel files that could be compared on a byte-by-byte level and be identical, even if their content was the same by eye. To obliviate this, and easing pipeline testing, the decision was made to move to the more reliable (and transparent) csv format. (
98f6225)
- multithreading: Correct relative imports (
3285559)
- BMSession: Change cache to False (
1ce9c51)
- repo: Initiate repository (
93b88cf)