{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":74564452,"defaultBranch":"master","name":"alignment-nf","ownerLogin":"IARCbioinfo","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2016-11-23T10:08:37.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/14090693?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1700830591.0","currentOid":""},"activityList":{"items":[{"before":"abd9bc8d103a148ef5bdc423a6f6c733caa7de54","after":"59dc7ef52577bd064966b0d4bea6b25423f34826","ref":"refs/heads/DSL2","pushedAt":"2024-02-15T07:38:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cahaisv","name":"Cahais Vincent","path":"/cahaisv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22960826?s=80&v=4"},"commit":{"message":"profile iarc_hg38","shortMessageHtmlLink":"profile iarc_hg38"}},{"before":"206ec3c214885da287ad7bd6ea7f42afd58aaa90","after":"abd9bc8d103a148ef5bdc423a6f6c733caa7de54","ref":"refs/heads/DSL2","pushedAt":"2024-02-15T07:32:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cahaisv","name":"Cahais Vincent","path":"/cahaisv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22960826?s=80&v=4"},"commit":{"message":"profile iarc_hg38","shortMessageHtmlLink":"profile iarc_hg38"}},{"before":"5d8993ae89a5102211d0a4b4dc8e731d755d7e5f","after":"206ec3c214885da287ad7bd6ea7f42afd58aaa90","ref":"refs/heads/DSL2","pushedAt":"2024-02-09T14:11:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cahaisv","name":"Cahais Vincent","path":"/cahaisv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22960826?s=80&v=4"},"commit":{"message":"export the bwa output when the recalibration is not activated","shortMessageHtmlLink":"export the bwa output when the recalibration is not activated"}},{"before":"06d7367def7da314b292f9e3200014a61969fedc","after":"5d8993ae89a5102211d0a4b4dc8e731d755d7e5f","ref":"refs/heads/DSL2","pushedAt":"2024-02-07T09:06:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cahaisv","name":"Cahais Vincent","path":"/cahaisv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22960826?s=80&v=4"},"commit":{"message":"handle single end mapping","shortMessageHtmlLink":"handle single end mapping"}},{"before":"ab0c0b6a0fbbb53770baf09dc0040f8d4aa73d27","after":"06d7367def7da314b292f9e3200014a61969fedc","ref":"refs/heads/DSL2","pushedAt":"2024-02-01T13:20:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cahaisv","name":"Cahais Vincent","path":"/cahaisv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22960826?s=80&v=4"},"commit":{"message":"Now alignment-nf can use the bwa-postalt.js inside container","shortMessageHtmlLink":"Now alignment-nf can use the bwa-postalt.js inside container"}},{"before":"559add2d98306f3ecbd003f5dd83a6221777a2e5","after":"ab0c0b6a0fbbb53770baf09dc0040f8d4aa73d27","ref":"refs/heads/DSL2","pushedAt":"2024-01-30T08:08:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cahaisv","name":"Cahais Vincent","path":"/cahaisv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22960826?s=80&v=4"},"commit":{"message":"set default path for postaltjs to the path in container","shortMessageHtmlLink":"set default path for postaltjs to the path in container"}},{"before":"28b526efc49273939a44b7d600ed5fb874c679ae","after":"559add2d98306f3ecbd003f5dd83a6221777a2e5","ref":"refs/heads/DSL2","pushedAt":"2024-01-25T14:06:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cahaisv","name":"Cahais Vincent","path":"/cahaisv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22960826?s=80&v=4"},"commit":{"message":"fix index pattern","shortMessageHtmlLink":"fix index pattern"}},{"before":"3672bb816827eda3242f2dadd92038b63d070b68","after":"28b526efc49273939a44b7d600ed5fb874c679ae","ref":"refs/heads/DSL2","pushedAt":"2023-12-08T10:38:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cahaisv","name":"Cahais Vincent","path":"/cahaisv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22960826?s=80&v=4"},"commit":{"message":"correct issues using bwa mem2","shortMessageHtmlLink":"correct issues using bwa mem2"}},{"before":"9f25766a370710729396fc38151d0f4ad2ee18e6","after":"3672bb816827eda3242f2dadd92038b63d070b68","ref":"refs/heads/DSL2","pushedAt":"2023-12-07T10:07:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cahaisv","name":"Cahais Vincent","path":"/cahaisv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22960826?s=80&v=4"},"commit":{"message":"correct bug in base_quality_score_recalibration","shortMessageHtmlLink":"correct bug in base_quality_score_recalibration"}},{"before":null,"after":"9f25766a370710729396fc38151d0f4ad2ee18e6","ref":"refs/heads/DSL2","pushedAt":"2023-11-24T12:56:31.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"cahaisv","name":"Cahais Vincent","path":"/cahaisv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22960826?s=80&v=4"},"commit":{"message":"DSL2","shortMessageHtmlLink":"DSL2"}},{"before":"168b18c8c662af9e2413ce847a81b06b266adc19","after":null,"ref":"refs/heads/cahaisv-patch-1","pushedAt":"2023-11-22T09:59:50.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"cahaisv","name":"Cahais Vincent","path":"/cahaisv","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22960826?s=80&v=4"}},{"before":"a55df581899407d7410b18465caca72a8d2a8547","after":"bdd569f2e25f9e5e106ba3abd5623a10f0215ee5","ref":"refs/heads/dev-cram","pushedAt":"2023-11-06T08:29:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nalcala","name":"Nicolas Alcala","path":"/nalcala","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12820674?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"8ef9e12a836225a7a974961f66aabd6d1851160d","after":"a55df581899407d7410b18465caca72a8d2a8547","ref":"refs/heads/dev-cram","pushedAt":"2023-11-06T08:28:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nalcala","name":"Nicolas Alcala","path":"/nalcala","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12820674?s=80&v=4"},"commit":{"message":"added CRAM realignment support","shortMessageHtmlLink":"added CRAM realignment support"}},{"before":null,"after":"8ef9e12a836225a7a974961f66aabd6d1851160d","ref":"refs/heads/dev-cram","pushedAt":"2023-11-06T08:17:36.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"nalcala","name":"Nicolas Alcala","path":"/nalcala","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12820674?s=80&v=4"},"commit":{"message":"Merge pull request #32 from brentp/update-mem2\n\nupdate to lastest bwa-mem2","shortMessageHtmlLink":"Merge pull request #32 from brentp/update-mem2"}}],"hasNextPage":false,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAD-0siOQA","startCursor":null,"endCursor":null}},"title":"Activity ยท IARCbioinfo/alignment-nf"}