MQ paths are wrong

[JorySchossau]

when referencing alternative paths, MQ should replace relative paths with absolute paths to the current directory: "../settings.cfg -> settings.cfg" because that's how they are copied.

[JorySchossau]

Conversation w/ Cliff -> Localize MABE dir and no copying would be necessary.

[cliff-bohm]

Is this a good topic for next weeks MABE meeting?

…

On Thu, Feb 1, 2018 at 3:27 PM, Jory Schossau ***@***.***> wrote: Conversation w/ Cliff -> Localize MABE dir and no copying would be necessary. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#122 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AG78enZ_ww_AwZlR-H62rFdw0-9DnoQIks5tQh40gaJpZM4R2M3u> .

-- Cliff Bohm - Evolving Systems Technologist BEACON Center for the Study of Evolution in Action Michigan State University

[JorySchossau]

Yes, as there were arguments against each decision. On Fri, Feb 2, 2018 at 9:02 AM, Clifford Bohm <notifications@github.com> wrote:

…

Is this a good topic for next weeks MABE meeting? On Thu, Feb 1, 2018 at 3:27 PM, Jory Schossau ***@***.***> wrote: > Conversation w/ Cliff -> Localize MABE dir and no copying would be > necessary. > > — > You are receiving this because you are subscribed to this thread. > Reply to this email directly, view it on GitHub > <#122 (comment)>, or mute > the thread > <https://github.com/notifications/unsubscribe-auth/AG78enZ_ww_AwZlR- H62rFdw0-9DnoQIks5tQh40gaJpZM4R2M3u> > . > -- Cliff Bohm - Evolving Systems Technologist BEACON Center for the Study of Evolution in Action Michigan State University — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#122 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/ACjbeXk9k6Dx-qm0u2tqXENY2ogOQLUYks5tQxWNgaJpZM4R2M3u> .

[JorySchossau]

We decided on requiring all files specified must be at or below the same dir level as MABE the MQ call dir. When running on the HPCC the path to each file will be recreated (thus the earlier requirement) and if you need other files outside this requirement, then make it fit the requirement by using symlinks.

[cgnitash]

So this issue is resolved?

[JorySchossau]

The folder structure should be recreated on compute nodes for all files specified in MQ by user.