convert-json-yaml.ipynb

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   "source": [
    "## Convert folder of json files to yaml using a bash one liner"
   ]
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      "========================================================================\n",
      "convert all json files in /Users/ehaas/Documents/FHIR/fhir-ipa/input/examples directory  to yaml in /Users/ehaas/Documents/FHIR/fhir-ipa/input/examples-yaml/json files\n",
      "outgoingPython 3.7 and PyYAML, json and sys modules are required\n",
      "example_json = /Users/ehaas/Documents/FHIR/fhir-ipa/input/examples/AllergyIntolerance-NKAExample.json\n",
      "example_yaml = /Users/ehaas/Documents/FHIR/fhir-ipa/input/examples-yaml/AllergyIntolerance-NKAExample.yaml\n",
      "example_json = /Users/ehaas/Documents/FHIR/fhir-ipa/input/examples/DocumentReference-USClinicalNoteExample1.json\n",
      "example_yaml = /Users/ehaas/Documents/FHIR/fhir-ipa/input/examples-yaml/DocumentReference-USClinicalNoteExample1.yaml\n",
      "example_json = /Users/ehaas/Documents/FHIR/fhir-ipa/input/examples/Medication-MedExample1.json\n",
      "example_yaml = /Users/ehaas/Documents/FHIR/fhir-ipa/input/examples-yaml/Medication-MedExample1.yaml\n",
      "example_json = /Users/ehaas/Documents/FHIR/fhir-ipa/input/examples/MedicationRequest-MedRecExample1.json\n",
      "example_yaml = /Users/ehaas/Documents/FHIR/fhir-ipa/input/examples-yaml/MedicationRequest-MedRecExample1.yaml\n",
      "example_json = /Users/ehaas/Documents/FHIR/fhir-ipa/input/examples/MedicationStatement-MedStatementExample1.json\n",
      "example_yaml = /Users/ehaas/Documents/FHIR/fhir-ipa/input/examples-yaml/MedicationStatement-MedStatementExample1.yaml\n",
      "example_json = /Users/ehaas/Documents/FHIR/fhir-ipa/input/examples/Observation-LabExample1.json\n",
      "example_yaml = /Users/ehaas/Documents/FHIR/fhir-ipa/input/examples-yaml/Observation-LabExample1.yaml\n",
      "example_json = /Users/ehaas/Documents/FHIR/fhir-ipa/input/examples/Observation-SmokingExample1.json\n",
      "example_yaml = /Users/ehaas/Documents/FHIR/fhir-ipa/input/examples-yaml/Observation-SmokingExample1.yaml\n",
      "example_json = /Users/ehaas/Documents/FHIR/fhir-ipa/input/examples/Observation-VitalSignsExample1.json\n",
      "example_yaml = /Users/ehaas/Documents/FHIR/fhir-ipa/input/examples-yaml/Observation-VitalSignsExample1.yaml\n",
      "example_json = /Users/ehaas/Documents/FHIR/fhir-ipa/input/examples/Practitioner-PractitionerExample1.json\n",
      "example_yaml = /Users/ehaas/Documents/FHIR/fhir-ipa/input/examples-yaml/Practitioner-PractitionerExample1.yaml\n",
      "example_json = /Users/ehaas/Documents/FHIR/fhir-ipa/input/examples/PractitionerRole-PractitionerRoleExample1.json\n",
      "example_yaml = /Users/ehaas/Documents/FHIR/fhir-ipa/input/examples-yaml/PractitionerRole-PractitionerRoleExample1.yaml\n",
      "=================================================================\n"
     ]
    }
   ],
   "source": [
    "%%bash\n",
    "base=/Users/ehaas/Documents/FHIR/fhir-ipa/input\n",
    "echo \"========================================================================\"\n",
    "echo \"convert all json files in $base/examples directory  to yaml in $base/examples-yaml/json files\"\n",
    "echo \"outgoingPython 3.7 and PyYAML, json and sys modules are required\"\n",
    "  for example_json in $base/examples/*.json\n",
    "    do\n",
    "    echo \"example_json = $example_json\"\n",
    "    example_yaml=$base/examples-yaml/$(basename $example_json)\n",
    "    example_yaml=${example_yaml%.*}.yaml\n",
    "    python3.7 -c 'import sys, yaml, json; yaml.dump(json.load(sys.stdin), sys.stdout, sort_keys=False, indent=2,)' < $example_json > $example_yaml\n",
    "    echo \"example_yaml = $example_yaml\"\n",
    "    done\n",
    "\n",
    "  echo \"=================================================================\"\n"
   ]
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