/
pipeline.yaml
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/
pipeline.yaml
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# Copyright 2021 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
---
resources:
- type: bigquery_table
table_id: state_facility_level_long_term_care
dag:
airflow_version: 1
initialize:
dag_id: "state_facility_level_long_term_care"
default_args:
owner: "Google"
# When set to True, keeps a task from getting triggered if the previous schedule for the task hasn’t succeeded
depends_on_past: False
start_date: '2021-03-01'
max_active_runs: 1
schedule_interval: "@once"
catchup: False
default_view: graph
tasks:
- operator: "BashOperator"
description: "Task to copy data from HTTP source to GCS or Airflow home dir"
args:
task_id: "download_raw_csv_files"
env:
airflow_home: "{{ var.json.shared.airflow_home }}"
dataset: covid19_tracking
pipeline: state_facility_level_long_term_care
bash_command: |
mkdir -p $airflow_home/data/$dataset/$pipeline
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-ar.csv -L https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_ar.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-ga.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_ga.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-in.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_in.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-il.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_il.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-ks.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_ks.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-sc.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_sc.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-hi.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_hi.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-ny.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_ny.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-ok.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_ok.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-nm.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_nm.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-wy.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_wy.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-oh.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_oh.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-md.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_md.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-ms.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_ms.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-co.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_co.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-la.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_la.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-me.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_me.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-ar.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_ar.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-nj.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_nj.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-va.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_va.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-ca.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_ca.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-nd.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_nd.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-ct.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_ct.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-vt.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_vt.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-mi.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_mi.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-or.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_or.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-tx.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_tx.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-tn.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_tn.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-mn.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_mn.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-wv.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_wv.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-nc.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_nc.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-ia.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_ia.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-fl.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_fl.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-ri.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_ri.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-pa.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_pa.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-de.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_de.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-ky.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_ky.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-dc.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_dc.csv
curl -o $airflow_home/data/$dataset/$pipeline/raw-facilities-id.csv https://github.com/COVID19Tracking/long-term-care-data/raw/master/facilities_id.csv
- operator: "BashOperator"
description: "Run the custom/csv_transform.py script to process the raw CSV contents into a BigQuery friendly format"
args:
task_id: "process_raw_csv_files"
bash_command: |
WORKING_DIR=$airflow_home/data/covid19_tracking/state_facility_level_long_term_care python $airflow_home/dags/$dataset/$pipeline/custom/multi_csv_transform.py
env:
airflow_home: "{{ var.json.shared.airflow_home }}"
dataset: "covid19_tracking"
pipeline: "state_facility_level_long_term_care"
- operator: "GoogleCloudStorageToBigQueryOperator"
description: "Task to load the CSV from the pipeline's data folder to BigQuery"
args:
task_id: "load_csv_files_to_bq_table"
bucket: "{{ var.json.shared.composer_bucket }}"
source_objects: [
"data/covid19_tracking/state_facility_level_long_term_care/facilities-ar.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-ga.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-in.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-il.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-ks.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-sc.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-hi.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-ny.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-ok.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-nm.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-wy.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-oh.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-md.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-ms.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-co.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-la.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-me.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-ar.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-nj.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-va.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-ca.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-nd.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-ct.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-vt.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-mi.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-or.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-tx.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-tn.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-mn.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-wv.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-nc.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-ia.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-fl.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-ri.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-pa.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-de.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-ky.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-dc.csv",
"data/covid19_tracking/state_facility_level_long_term_care/facilities-id.csv"
]
source_format: "CSV"
destination_project_dataset_table: "covid19_tracking.state_facility_level_long_term_care"
skip_leading_rows: 1
write_disposition: "WRITE_TRUNCATE"
schema_fields:
- name: "date"
type: "DATE"
mode: "REQUIRED"
description: "Date of the observations"
- name: "state"
type: "STRING"
mode: "REQUIRED"
description: "2-letter postal abbreviation for the state"
- name: "county"
type: "STRING"
mode: "NULLABLE"
description: "The name of the county in uppercase letters"
- name: "city"
type: "STRING"
mode: "NULLABLE"
description: "The name of the city in uppercase letters"
- name: "facility_name"
type: "STRING"
mode: "REQUIRED"
description: "The facility name in uppercase letters"
- name: "facility_type_state"
type: "STRING"
mode: "NULLABLE"
- name: "ctp_facility_category"
type: "STRING"
mode: "NULLABLE"
- name: "state_fed_regulated"
type: "STRING"
mode: "NULLABLE"
- name: "state_facility_id"
type: "STRING"
mode: "NULLABLE"
- name: "facility_cms_id"
type: "STRING"
mode: "NULLABLE"
- name: "date_outbreak_opened"
type: "STRING"
mode: "NULLABLE"
- name: "date_outbreak_closed"
type: "STRING"
mode: "NULLABLE"
- name: "outbreak_status"
type: "STRING"
mode: "NULLABLE"
- name: "resident_census"
type: "STRING"
mode: "NULLABLE"
- name: "resident_positives"
type: "STRING"
mode: "NULLABLE"
- name: "resident_probable"
type: "STRING"
mode: "NULLABLE"
- name: "resident_deaths"
type: "STRING"
mode: "NULLABLE"
- name: "resident_probable_deaths"
type: "STRING"
mode: "NULLABLE"
- name: "staff_positive"
type: "STRING"
mode: "NULLABLE"
- name: "staff_probable"
type: "STRING"
mode: "NULLABLE"
- name: "staff_deaths"
type: "STRING"
mode: "NULLABLE"
- name: "staff_probable_deaths"
type: "STRING"
mode: "NULLABLE"
- name: "resident_staff_positives"
type: "STRING"
mode: "NULLABLE"
- name: "resident_staff_probable_positives"
type: "STRING"
mode: "NULLABLE"
- name: "resident_staff_deaths"
type: "STRING"
mode: "NULLABLE"
- name: "resident_staff_probable_deaths"
type: "STRING"
mode: "NULLABLE"
- name: "outbreak_resident_positives"
type: "STRING"
mode: "NULLABLE"
- name: "outbreak_resident_probable"
type: "STRING"
mode: "NULLABLE"
- name: "outbreak_resident_deaths"
type: "STRING"
mode: "NULLABLE"
- name: "outbreak_resident_probable_deaths"
type: "STRING"
mode: "NULLABLE"
- name: "outbreak_staff_positive"
type: "STRING"
mode: "NULLABLE"
- name: "outbreak_staff_probable"
type: "STRING"
mode: "NULLABLE"
- name: "outbreak_staff_deaths"
type: "STRING"
mode: "NULLABLE"
- name: "outbreak_staff_probable_deaths"
type: "STRING"
mode: "NULLABLE"
- name: "outbreak_resident_staff_positives"
type: "STRING"
mode: "NULLABLE"
- name: "outbreak_resident_staff_probable_positives"
type: "STRING"
mode: "NULLABLE"
- name: "outbreak_resident_staff_deaths"
type: "STRING"
mode: "NULLABLE"
- name: "outbreak_resident_staff_probable_deaths"
type: "STRING"
mode: "NULLABLE"
- name: "outbreak_residents_tested"
type: "STRING"
mode: "NULLABLE"
- name: "staff_tested"
type: "STRING"
mode: "NULLABLE"
- name: "personal_protective_equipment"
type: "STRING"
mode: "NULLABLE"
- operator: "GoogleCloudStorageToGoogleCloudStorageOperator"
description: "Task to archive the CSV file in the destination bucket"
args:
task_id: "archive_csv_files_to_destination_bucket"
source_bucket: "{{ var.json.shared.composer_bucket }}"
source_object: "data/covid19_tracking/state_facility_level_long_term_care/*"
destination_bucket: "{{ var.json.covid19_tracking.destination_bucket }}"
destination_object: "datasets/covid19_tracking/state_facility_level_long_term_care/{{ ds }}/"
move_object: True
graph_paths:
- "download_raw_csv_files >> process_raw_csv_files"
- "process_raw_csv_files >> load_csv_files_to_bq_table"
- "load_csv_files_to_bq_table >> archive_csv_files_to_destination_bucket"