{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":150765734,"defaultBranch":"master","name":"geneshot","ownerLogin":"Golob-Minot","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2018-09-28T16:15:01.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/60358088?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1698975664.0","currentOid":""},"activityList":{"items":[{"before":"8127621a10586706db0757cc983b53c04d97ff05","after":"a840c0a3edcefc695883004cd2d66ce47112c3c9","ref":"refs/heads/rc_pre_2.0","pushedAt":"2024-04-22T14:33:35.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jgolob","name":"Jonathan Golob","path":"/jgolob","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16406897?s=80&v=4"},"commit":{"message":"Merge branch 'rc_pre_2.0' of ssh://github.com/Golob-Minot/geneshot into rc_pre_2.0","shortMessageHtmlLink":"Merge branch 'rc_pre_2.0' of ssh://github.com/Golob-Minot/geneshot in…"}},{"before":"b0e44580a33c6e45afe19ecdfcd7c55cc1c70a97","after":"8127621a10586706db0757cc983b53c04d97ff05","ref":"refs/heads/rc_pre_2.0","pushedAt":"2024-04-12T17:04:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jgolob","name":"Jonathan Golob","path":"/jgolob","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16406897?s=80&v=4"},"commit":{"message":"Further link correction","shortMessageHtmlLink":"Further link correction"}},{"before":"69306d84fe044d1642b6572ffa3336255ecdbc2a","after":"b0e44580a33c6e45afe19ecdfcd7c55cc1c70a97","ref":"refs/heads/rc_pre_2.0","pushedAt":"2024-04-12T16:59:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jgolob","name":"Jonathan Golob","path":"/jgolob","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16406897?s=80&v=4"},"commit":{"message":"corrected bug in clustering control","shortMessageHtmlLink":"corrected bug in clustering control"}},{"before":"fbba1615c2cb68a06de98e769c9e9a433c3f3aad","after":"69306d84fe044d1642b6572ffa3336255ecdbc2a","ref":"refs/heads/rc_pre_2.0","pushedAt":"2024-04-12T16:57:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jgolob","name":"Jonathan Golob","path":"/jgolob","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16406897?s=80&v=4"},"commit":{"message":"Added parameters for clustering for quantification and set default to U90 style.","shortMessageHtmlLink":"Added parameters for clustering for quantification and set default to…"}},{"before":"bc4040d24cc6eb159f44f5f4a75f3c882de55ed6","after":"fbba1615c2cb68a06de98e769c9e9a433c3f3aad","ref":"refs/heads/rc_pre_2.0","pushedAt":"2024-04-11T17:56:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jgolob","name":"Jonathan Golob","path":"/jgolob","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16406897?s=80&v=4"},"commit":{"message":"Updated docker containers","shortMessageHtmlLink":"Updated docker containers"}},{"before":"2084b7f6df5c532cee01a7384830f757b454397b","after":"bc4040d24cc6eb159f44f5f4a75f3c882de55ed6","ref":"refs/heads/rc_pre_2.0","pushedAt":"2024-04-11T17:47:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jgolob","name":"Jonathan Golob","path":"/jgolob","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16406897?s=80&v=4"},"commit":{"message":"Reworked dereplication of alleles to be more efficient","shortMessageHtmlLink":"Reworked dereplication of alleles to be more efficient"}},{"before":"8e08ec9dd0ad3b334c92850996fbf183ee715230","after":"2084b7f6df5c532cee01a7384830f757b454397b","ref":"refs/heads/rc_pre_2.0","pushedAt":"2024-04-11T16:02:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jgolob","name":"Jonathan Golob","path":"/jgolob","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16406897?s=80&v=4"},"commit":{"message":"adjusted memory needs for dereplication of alleles","shortMessageHtmlLink":"adjusted memory needs for dereplication of alleles"}},{"before":"4a6c4db8c8675a10a4725cbeabba9695b119b11a","after":"8e08ec9dd0ad3b334c92850996fbf183ee715230","ref":"refs/heads/rc_pre_2.0","pushedAt":"2024-04-10T20:44:25.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jgolob","name":"Jonathan Golob","path":"/jgolob","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16406897?s=80&v=4"},"commit":{"message":"Avoid merging and instead just concatenate forward and reverse reads","shortMessageHtmlLink":"Avoid merging and instead just concatenate forward and reverse reads"}},{"before":"24d759ef6dd1da86cbdf1139ab168c75a91a69f6","after":"4a6c4db8c8675a10a4725cbeabba9695b119b11a","ref":"refs/heads/rc_pre_2.0","pushedAt":"2024-04-10T20:32:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jgolob","name":"Jonathan Golob","path":"/jgolob","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16406897?s=80&v=4"},"commit":{"message":"Moved to FLASh for merging of read pairs\nKept unmerged reads","shortMessageHtmlLink":"Moved to FLASh for merging of read pairs"}},{"before":"bc061779f1e2ddca7540b716350b53f50cd193e1","after":"24d759ef6dd1da86cbdf1139ab168c75a91a69f6","ref":"refs/heads/rc_pre_2.0","pushedAt":"2024-04-10T17:53:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jgolob","name":"Jonathan Golob","path":"/jgolob","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16406897?s=80&v=4"},"commit":{"message":"Corrected help message","shortMessageHtmlLink":"Corrected help message"}},{"before":"304a21bca232be765723a044a4005e541d806de4","after":"bc061779f1e2ddca7540b716350b53f50cd193e1","ref":"refs/heads/rc_pre_2.0","pushedAt":"2024-04-10T17:46:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jgolob","name":"Jonathan Golob","path":"/jgolob","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16406897?s=80&v=4"},"commit":{"message":"Quantify dereplicated alleles.\nMore complete 'full' test workflow evaluation","shortMessageHtmlLink":"Quantify dereplicated alleles."}},{"before":"3f4d28e2585b93feca3be469fc8ff2599056be64","after":"304a21bca232be765723a044a4005e541d806de4","ref":"refs/heads/rc_pre_2.0","pushedAt":"2024-04-10T17:36:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jgolob","name":"Jonathan Golob","path":"/jgolob","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16406897?s=80&v=4"},"commit":{"message":"Basic working main.nf\nSlight modification to other modules to smooth out the process","shortMessageHtmlLink":"Basic working main.nf"}},{"before":"6b91902b3d08f79beb419b34e61eec55522a405e","after":"3f4d28e2585b93feca3be469fc8ff2599056be64","ref":"refs/heads/rc_pre_2.0","pushedAt":"2024-04-10T15:35:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jgolob","name":"Jonathan Golob","path":"/jgolob","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16406897?s=80&v=4"},"commit":{"message":"Further removal of deprecated entry points","shortMessageHtmlLink":"Further removal of deprecated entry points"}},{"before":"15f9f2b2161621a0c8e42e35afd0061b5a187fa2","after":"6b91902b3d08f79beb419b34e61eec55522a405e","ref":"refs/heads/rc_pre_2.0","pushedAt":"2024-04-10T15:33:13.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jgolob","name":"Jonathan Golob","path":"/jgolob","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16406897?s=80&v=4"},"commit":{"message":"Further tidying","shortMessageHtmlLink":"Further tidying"}},{"before":"d6a910cbffa27920243bd1d029548369082189a1","after":"15f9f2b2161621a0c8e42e35afd0061b5a187fa2","ref":"refs/heads/rc_pre_2.0","pushedAt":"2024-04-08T21:12:39.000Z","pushType":"pr_merge","commitsCount":42,"pusher":{"login":"jgolob","name":"Jonathan Golob","path":"/jgolob","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16406897?s=80&v=4"},"commit":{"message":"Merge pull request #92 from Golob-Minot/anndata\n\nAnndata output format functional through quantification","shortMessageHtmlLink":"Merge pull request #92 from Golob-Minot/anndata"}},{"before":"322a5418a7b99b674a5584334054a08a6735469f","after":"8222a174654602fbad24d48348eb9b16f95be61c","ref":"refs/heads/anndata","pushedAt":"2024-04-08T20:20:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jgolob","name":"Jonathan Golob","path":"/jgolob","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16406897?s=80&v=4"},"commit":{"message":"Added in a proper merge of fastq and corrected qc manifest","shortMessageHtmlLink":"Added in a proper merge of fastq and corrected qc manifest"}},{"before":"c1b7348d08539905f719906ed214991154938638","after":"322a5418a7b99b674a5584334054a08a6735469f","ref":"refs/heads/anndata","pushedAt":"2024-04-08T17:53:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jgolob","name":"Jonathan Golob","path":"/jgolob","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16406897?s=80&v=4"},"commit":{"message":"Much tighter query ID and coverage defaults fitting the intent to align back to the same reference..","shortMessageHtmlLink":"Much tighter query ID and coverage defaults fitting the intent to ali…"}},{"before":"eeea94e3847c3f35ed92513827a006bc4ce68260","after":"c1b7348d08539905f719906ed214991154938638","ref":"refs/heads/anndata","pushedAt":"2023-11-03T18:27:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jgolob","name":"Jonathan Golob","path":"/jgolob","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16406897?s=80&v=4"},"commit":{"message":"Make output conform to remainder of modules","shortMessageHtmlLink":"Make output conform to remainder of modules"}},{"before":"330481f5b4e8f27f9079254c26a021cfe6ebaee5","after":"eeea94e3847c3f35ed92513827a006bc4ce68260","ref":"refs/heads/anndata","pushedAt":"2023-11-03T15:37:21.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"jgolob","name":"Jonathan Golob","path":"/jgolob","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16406897?s=80&v=4"},"commit":{"message":"Merge branch 'anndata' of ssh://github.com/Golob-Minot/geneshot into anndata","shortMessageHtmlLink":"Merge branch 'anndata' of ssh://github.com/Golob-Minot/geneshot into …"}},{"before":"a85f336fbea15c9256db640b8cb3239f0764c81b","after":"330481f5b4e8f27f9079254c26a021cfe6ebaee5","ref":"refs/heads/anndata","pushedAt":"2023-11-03T01:54:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jgolob","name":"Jonathan Golob","path":"/jgolob","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16406897?s=80&v=4"},"commit":{"message":"Corrected diamond makedb\nAdded more details to annotation database downloading.","shortMessageHtmlLink":"Corrected diamond makedb"}},{"before":"c6763f4be9f61e85509aae6e7493c991719c8f1d","after":null,"ref":"refs/heads/anndata_eggnog","pushedAt":"2023-11-03T01:41:04.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jgolob","name":"Jonathan Golob","path":"/jgolob","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16406897?s=80&v=4"}},{"before":"0727492a58fdc1781b2de60d08047fe13409d1fc","after":"a85f336fbea15c9256db640b8cb3239f0764c81b","ref":"refs/heads/anndata","pushedAt":"2023-11-03T01:40:49.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"jgolob","name":"Jonathan Golob","path":"/jgolob","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16406897?s=80&v=4"},"commit":{"message":"Merge pull request #90 from Golob-Minot/anndata_eggnog\n\nUpdate annotation workflow","shortMessageHtmlLink":"Merge pull request #90 from Golob-Minot/anndata_eggnog"}},{"before":"2c11f17cdfdfc555280bdc602ca73ea5db2f3743","after":"0727492a58fdc1781b2de60d08047fe13409d1fc","ref":"refs/heads/anndata","pushedAt":"2023-11-03T01:39:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jgolob","name":"Jonathan Golob","path":"/jgolob","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16406897?s=80&v=4"},"commit":{"message":"Removed duplicative diamond index process","shortMessageHtmlLink":"Removed duplicative diamond index process"}},{"before":"169f1b973c1c03ab9d720fc9e2feaa4b776e47c3","after":"2c11f17cdfdfc555280bdc602ca73ea5db2f3743","ref":"refs/heads/anndata","pushedAt":"2023-11-03T00:20:56.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jgolob","name":"Jonathan Golob","path":"/jgolob","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16406897?s=80&v=4"},"commit":{"message":"Corrected tests to use config and profile","shortMessageHtmlLink":"Corrected tests to use config and profile"}},{"before":"7e542e3865a8020728c1921ca0b14aafa4254f4d","after":"169f1b973c1c03ab9d720fc9e2feaa4b776e47c3","ref":"refs/heads/anndata","pushedAt":"2023-11-02T21:39:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jgolob","name":"Jonathan Golob","path":"/jgolob","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16406897?s=80&v=4"},"commit":{"message":"quantify module...","shortMessageHtmlLink":"quantify module..."}},{"before":"c4288ab523d2cd2822f75b834b8a9cee01e81684","after":"7e542e3865a8020728c1921ca0b14aafa4254f4d","ref":"refs/heads/anndata","pushedAt":"2023-11-02T21:12:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jgolob","name":"Jonathan Golob","path":"/jgolob","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16406897?s=80&v=4"},"commit":{"message":"Corrected tests","shortMessageHtmlLink":"Corrected tests"}},{"before":"d077544629670a806f764f719bcba2cab8384861","after":"c4288ab523d2cd2822f75b834b8a9cee01e81684","ref":"refs/heads/anndata","pushedAt":"2023-11-02T20:50:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jgolob","name":"Jonathan Golob","path":"/jgolob","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16406897?s=80&v=4"},"commit":{"message":"Corrected test typo","shortMessageHtmlLink":"Corrected test typo"}},{"before":"e0d51989dd17b52528a2d13a46089b50119e9101","after":"d077544629670a806f764f719bcba2cab8384861","ref":"refs/heads/anndata","pushedAt":"2023-11-02T20:45:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jgolob","name":"Jonathan Golob","path":"/jgolob","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16406897?s=80&v=4"},"commit":{"message":"Clustering module","shortMessageHtmlLink":"Clustering module"}},{"before":"8582d17baadc4c8873d8f8309b00b1b74165a91f","after":"e0d51989dd17b52528a2d13a46089b50119e9101","ref":"refs/heads/anndata","pushedAt":"2023-11-02T20:04:35.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jgolob","name":"Jonathan Golob","path":"/jgolob","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16406897?s=80&v=4"},"commit":{"message":"Add tests for contig and allele catalog","shortMessageHtmlLink":"Add tests for contig and allele catalog"}},{"before":"e99f24abab3d0e955eaba534b61e0e45c42c2bc2","after":"8582d17baadc4c8873d8f8309b00b1b74165a91f","ref":"refs/heads/anndata","pushedAt":"2023-11-02T18:35:19.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jgolob","name":"Jonathan Golob","path":"/jgolob","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16406897?s=80&v=4"},"commit":{"message":"Tests for composition and example output.","shortMessageHtmlLink":"Tests for composition and example output."}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAENx0CaQA","startCursor":null,"endCursor":null}},"title":"Activity · Golob-Minot/geneshot"}