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azure-pipelines.yml
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azure-pipelines.yml
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# Python package
# Create and test a Python package on multiple Python versions.
# Add steps that analyze code, save the dist with the build record, publish to a PyPI-compatible index, and more:
# https://docs.microsoft.com/azure/devops/pipelines/languages/python
trigger:
- main
strategy:
matrix:
linux_3.8:
imageName: 'ubuntu-latest'
python.version: '3.8'
mac_3.8:
imageName: 'macos-latest'
python.version: '3.8'
windows_3.8:
imageName: 'windows-latest'
python.version: '3.8'
pool:
vmImage: $(imageName)
steps:
- task: UsePythonVersion@0
inputs:
versionSpec: '$(python.version)'
displayName: 'Use Python $(python.version)'
- script: |
python -m pip install --upgrade pip
pip install .
pip install artifacts-keyring
displayName: 'Install dependencies'
- script: |
python fusion_run -inputs ./data/unet.nii.gz,./data/resunet.nii.gz -output ./data/test_staple.nii.gz -classes 0,1,2,4 -method staple
python -c "from LabelFusion.itkUtils import *; sys.exit('fail') if(not (imageComparision('./data/baseline_staple.nii.gz', './data/test_staple.nii.gz'))) else print('pass')"
displayName: 'Run through staple'
- script: |
python fusion_run -inputs ./data/unet.nii.gz,./data/resunet.nii.gz -output ./data/test_itkvoting.nii.gz -classes 0,1,2,4 -method itkvoting
python -c "from LabelFusion.itkUtils import *; sys.exit('fail') if(not (imageComparision('./data/baseline_itkvoting.nii.gz', './data/test_itkvoting.nii.gz'))) else print('pass')"
displayName: 'Run through itkvoting'
- script: |
python fusion_run -inputs ./data/unet.nii.gz,./data/resunet.nii.gz -output ./data/test_majorityvoting.nii.gz -classes 0,1,2,4 -method majorityvoting
python -c "from LabelFusion.itkUtils import *; sys.exit('fail') if(not (imageComparision('./data/baseline_majorityvoting.nii.gz', './data/test_majorityvoting.nii.gz'))) else print('pass')"
displayName: 'Run through majorityvoting'
- script: |
python fusion_run -inputs ./data/unet.nii.gz,./data/resunet.nii.gz -output ./data/test_simple.nii.gz -classes 0,1,2,4 -method simple
python -c "from LabelFusion.itkUtils import *; sys.exit('fail') if(not (imageComparision('./data/baseline_simple.nii.gz', './data/test_simple.nii.gz'))) else print('pass')"
displayName: 'Run through simple'