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Dockerfile
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Dockerfile
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## ------------ first stage: --------------
##
# Use a small linux with Python
FROM python:3.7.8-slim-buster AS jupyterbookbuilder-base-image
RUN pip install \
alabaster==0.7.12 \
anyio==2.2.0 \
argon2-cffi==20.1.0 \
async-generator==1.10 \
attrs==20.3.0 \
Babel==2.9.0 \
backcall==0.2.0 \
beautifulsoup4==4.9.3 \
bleach==3.3.0 \
certifi==2020.12.5 \
cffi==1.14.5 \
chardet==4.0.0 \
click==7.1.2 \
colorama==0.4.4 \
decorator==5.0.7 \
defusedxml==0.7.1 \
deprecation==2.1.0 \
docutils==0.16 \
entrypoints==0.3 \
gitdb==4.0.7 \
GitPython==3.1.14 \
idna==2.10 \
imagesize==1.2.0 \
importlib-metadata==4.0.1 \
ipykernel==5.5.3 \
ipython==7.31.1 \
ipython-genutils==0.2.0 \
ipywidgets==7.6.3 \
jedi==0.18.0 \
Jinja2==2.11.3 \
jsonschema==3.2.0 \
jupyter-book==0.10.2 \
jupyter-cache==0.4.2 \
jupyter-client==6.1.12 \
jupyter-core==4.7.1 \
jupyter-packaging==0.9.2 \
jupyter-server==1.15.4 \
jupyter-server-mathjax==0.2.2 \
jupyter-sphinx==0.3.1 \
jupyterbook-latex==0.2.0 \
jupyterlab-widgets==1.0.0 \
jupytext==1.10.3 \
latexcodec==2.0.1 \
linkify-it-py==1.0.1 \
markdown-it-py==0.6.2 \
MarkupSafe==1.1.1 \
mdit-py-plugins==0.2.6 \
mistune==0.8.4 \
myst-nb==0.12.0 \
myst-parser==0.13.6 \
nbclient==0.5.3 \
nbconvert==5.6.1 \
nbdime==3.1.1 \
nbformat==5.1.3 \
nest-asyncio==1.5.1 \
nested-lookup==0.2.22 \
notebook>=6.4.12 \
packaging==20.9 \
pandocfilters==1.4.3 \
parso==0.8.2 \
pexpect==4.8.0 \
pickleshare==0.7.5 \
prometheus-client==0.10.1 \
prompt-toolkit==3.0.18 \
ptyprocess==0.7.0 \
pybtex==0.24.0 \
pybtex-docutils==1.0.0 \
pycparser==2.20 \
pydata-sphinx-theme==0.4.3 \
Pygments==2.8.1 \
pyparsing==2.4.7 \
pyrsistent==0.17.3 \
python-dateutil==2.8.1 \
pytz==2021.1 \
PyYAML==5.4.1 \
pyzmq==22.0.3 \
requests==2.25.1 \
Send2Trash>=1.8.0 \
six==1.15.0 \
smmap==4.0.0 \
sniffio==1.2.0 \
snowballstemmer==2.1.0 \
soupsieve==2.2.1 \
Sphinx==3.5.4 \
sphinx-book-theme==0.0.42 \
sphinx-comments==0.0.3 \
sphinx-copybutton==0.3.1 \
sphinx-panels==0.5.2 \
sphinx-thebe==0.0.8 \
sphinx-togglebutton==0.2.3 \
sphinxcontrib-applehelp==1.0.2 \
sphinxcontrib-bibtex==2.1.0 \
sphinxcontrib-devhelp==1.0.2 \
sphinxcontrib-htmlhelp==1.0.3 \
sphinxcontrib-jsmath==1.0.1 \
sphinxcontrib-qthelp==1.0.3 \
sphinxcontrib-serializinghtml==1.1.4 \
sphinx-sitemap==2.2.0 \
sphinxcontrib-youtube==1.2.0 \
SQLAlchemy==1.3.24 \
terminado==0.9.4 \
testpath==0.4.4 \
toml==0.10.2 \
tomlkit==0.7.0 \
tornado==6.1 \
traitlets==5.0.5 \
uc-micro-py==1.0.1 \
urllib3==1.26.5 \
wcwidth==0.2.5 \
webencodings==0.5.1 \
widgetsnbextension==3.5.1 \
zipp==3.4.1 \
pygments-csv-lexer==0.1.3
# Document
RUN pip freeze > /pip_freeze_actual.txt
# Print
RUN cat /pip_freeze_actual.txt
## ------------ next stage: --------------
## build the images from mermaid files
FROM alpine as orchestrator
COPY ./ ./
RUN find . -iname "*.mmd" > list_of_all_mermaid_files.txt
RUN tar c -f all_mermaid_files.tar -T list_of_all_mermaid_files.txt
RUN ls -lh all_mermaid_files.tar
## ------------ next stage: --------------
## build the images from mermaid files
FROM minlag/mermaid-cli:8.13.4 as imageconverter
WORKDIR /home/mermaidcli
RUN echo "{\"args\": [ \"--no-sandbox\" ] }" > puppeteer-config.json
COPY --from=orchestrator all_mermaid_files.tar list_of_all_mermaid_files.txt ./
RUN tar -xf all_mermaid_files.tar
RUN cat list_of_all_mermaid_files.txt | while read line; do echo $line && ./node_modules/.bin/mmdc -p puppeteer-config.json -i $line -w 800 -o $line.png ; done
RUN cat list_of_all_mermaid_files.txt | while read line; do echo $line && ./node_modules/.bin/mmdc -p puppeteer-config.json -i $line -w 1600 -o $line.hi-res.png ; done
RUN cat list_of_all_mermaid_files.txt | while read line; do echo $line && ./node_modules/.bin/mmdc -p puppeteer-config.json -i $line -w 400 -o $line.lo-res.png ; done
RUN cat list_of_all_mermaid_files.txt | while read line; do echo $line && ./node_modules/.bin/mmdc -p puppeteer-config.json -i $line -o $line.svg ; done
RUN cp list_of_all_mermaid_files.txt list_of_files_to_copy.txt
RUN sed 's/$/.png/' list_of_all_mermaid_files.txt >> list_of_files_to_copy.txt
RUN sed 's/$/.hi-res.png/' list_of_all_mermaid_files.txt >> list_of_files_to_copy.txt
RUN sed 's/$/.lo-res.png/' list_of_all_mermaid_files.txt >> list_of_files_to_copy.txt
RUN sed 's/$/.svg/' list_of_all_mermaid_files.txt >> list_of_files_to_copy.txt
RUN tar -cf ./all_raw_and_converted_mermaid_images.tar -T list_of_files_to_copy.txt
## ------------ next stage: --------------
## load the content
FROM jupyterbookbuilder-base-image AS jupyterbookbuilder
# Set the working directory. You can customize this path to be equivalent to your computer's
# directory structure, e.g. if you use an Integrated Development Environment (IDE) which allows you
# to click on file names from a terminal...
WORKDIR /Users/philippe/Documents/git/FAIRplus-org/the-fair-cookbook
# Create an empty folder to prevent failure later on
RUN mkdir -p ./_build/html
# Copy files
COPY ./ ./
COPY --from=imageconverter /home/mermaidcli/all_raw_and_converted_mermaid_images.tar .
RUN tar -xf all_raw_and_converted_mermaid_images.tar
# Start the actual build
RUN python -u -c "import jupyter_book.commands; jupyter_book.commands.main()" build ./ 2>&1 | tee ./_build/build.log
# Let the build fail if there are errors in the build of the jupyter_book
RUN grep "There was an error in building your book. Look above for the cause." ./_build/build.log; test $? -eq 1
# Clean the build log from all escape characters used for highlighting text (e.g. bold, red) and the
# "interactive" feel (i.e. going back to start of line and overwrite to create a up-counting progress bar)
RUN sed "s,\x1B\[[0-9;]*[a-zA-Z],,g" ./_build/build.log > ./_build/cleaned_build.log
# pack the whole build folder into a gzipped tar file
RUN tar -cf /out.tar ./_build
# output what's in the _build folder, just for the sake of it.
RUN ls -alh ./_build
## ... all content was converted to html now and sits in WORKDIR/_build
## ... a build log can be found in WORKDIR/_build/build.log