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Allow qFit to run with multiple backbone inputs #382

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merged 14 commits into from Jan 29, 2024

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If the input PDB has altlocs for C, CA, N, or O, it will run qFit residue starting from both conformations. This specifically will run sample_backbone x number of times determined by the number of backbone coordinates. This will then feed in both samplings into the coor_set for subsequent sampling.

This is done by creating a dictionary in qfit_protein with the coordinates for all altlocs and the anisotropic matrix if applicable.

This is still suffering from over-sampling with angle (and making it 2x or 3x worse), but is still returning the same conformations.

@stephaniewankowicz stephaniewankowicz linked an issue Dec 31, 2023 that may be closed by this pull request
@stephaniewankowicz stephaniewankowicz marked this pull request as draft December 31, 2023 17:05
@stephaniewankowicz stephaniewankowicz marked this pull request as ready for review December 31, 2023 23:48
@stephaniewankowicz stephaniewankowicz changed the base branch from main to dev January 9, 2024 18:46
@stephaniewankowicz stephaniewankowicz merged commit e7093d1 into dev Jan 29, 2024
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@stephaniewankowicz stephaniewankowicz deleted the 376-multiple-backbone-positions branch January 29, 2024 22:39
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Start qFit residue from multiple backbone positions
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