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Unexpected crash when integrating peaks #1419

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MetabolomicsAustralia-Bioinformatics opened this issue May 16, 2023 · 0 comments
Open

Unexpected crash when integrating peaks #1419

MetabolomicsAustralia-Bioinformatics opened this issue May 16, 2023 · 0 comments

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@MetabolomicsAustralia-Bioinformatics
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Describe the bug

When working on integrating peaks on the main panel, the software crashes without any error message. Similarly, when moving an isotopologue of a particular metabolite into the parent group, the software crashes.

The software is highly likely to crash during both procedures, but not 100%.

Interestingly, when using the "glances" (and htop) to monitor the system performance, a critical warning pops out each time software creates. The number of threads created by the software is uncontrollably huge, and this makes CPU usage suddenly skyrocket.

The size of the data is:

  • 37 input files (raw files were converted into mzML files using msConvert ),
  • 8 GB in total,
  • 490 metabolites in the library

System (please complete the following information):

Linux 5.15.0-71-generic #78-Ubuntu SMP Tue Apr 18 09:00:29 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux

Architecture: x86_64
Address sizes: 40 bits physical, 48 bits virtual
Byte Order: Little Endian
CPU(s): 16
Vendor ID: AuthenticAMD
Model name: AMD EPYC 7702 64-Core Processor
CPU family: 23
Model: 49

64GB of Memory
The swap has been turned off

image

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