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Y Axis in Peak Editor skews chromatogram #1399

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kehj215 opened this issue Apr 5, 2021 · 3 comments
Open

Y Axis in Peak Editor skews chromatogram #1399

kehj215 opened this issue Apr 5, 2021 · 3 comments

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@kehj215
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kehj215 commented Apr 5, 2021

Describe the bug
When scrolling through samples in peak editor, some have a skewed, incredibly large Y axis that skews the chromatogram so no peaks (or noise) are visible.

To Reproduce
Steps to reproduce the behavior:

  1. Go to bookmarked peak
  2. Click on peak editor
  3. click through samples, some (I've seen it most often with my "blanks") appear with a skewed Y axis.

Expected behavior
Y axis is represented in scientific notation so peaks and noise in the chromatogram are visible.

Screenshots
one of a blank with a skewed Y axis and one of a blank with an expected Y axis.

System (please complete the following information):

  • OS: macOS big sur
  • Version: v0.12.1-alpha

Screen Shot 2021-04-05 at 10 48 57 AM

Screen Shot 2021-04-05 at 10 49 54 AM

Additional context
Add any other context about the problem here.

@saif-el
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saif-el commented Apr 6, 2021

@kehj215 Is it possible that the sample "blank_008" has no signal in that window? Even then, the y-axis values should not be ridiculous like that. Can you try moving the vertical slider (beside the chromatogram plot in peak-editor)? It essentially downscales the y-axis for cases when peaks of interest are too small compared to the highest intensities in the chromatogram.

@kehj215
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kehj215 commented Apr 6, 2021

Yes, in fact I expect there to be no peaks in the blank, but I do anticipate some noise. I tried moving the vertical slider, but it has no effect.

@saif-el
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saif-el commented Apr 12, 2021

Here too, can we get one of those blank samples where the issue is easily reproduced?

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