El-MAVEN v0.12.0 crashes at 100% using Align function

[showar26]

Describe the bug
El-Maven 11 crashes when using the Align function and it reaches 100%. A pooled sample is selected as the reference sample. Default options are used.

To Reproduce
Steps to reproduce the behavior:

1. Go to '...'
2. Click on '....'
3. See error

Expected behavior
Expecting the samples to finishing alignment using the reference sample without crashing the program.

Screenshots
If applicable, add screenshots to help explain your problem.

System (please complete the following information):
Windows 10 Home
El-MAVEN v0.12.0

Additional context
Single file size is over 400 kb. Loading around 70 files.

[saifulbkhan]

@showar26 Since your sample file size is that small, could it be that these are from an MRM experiment? If so, then I am not surprised at this behaviour. Neither of the alignment algorithms work for MRM (or any kind of pure MS2) data yet.

But if these are samples from a full-scan MS1 experiment, would it be possible for you to share a small subset of those files with us, with which this crash reproduces consistently? You can share them over email (elmaven@elucidata.io), or however else you like.

[showar26]

The files are not from a MRM experiment. The acquisition is full MS scan. It seems to be any time I use the align function. I can use files from different projects and the problem still happens. I have uninstalled then reinstalled the program, which has not helped the problem. Yes, I can send a few files. Do you have an idea of how I can do that? I tried attaching 6 mzML files in a .zip folder but it is still too big. Thanks, Sara Howard From: Saiful B. Khan <notifications@github.com> Sent: Tuesday, December 29, 2020 10:23 PM To: ElucidataInc/ElMaven <ElMaven@noreply.github.com> Cc: Howard, Sara Michelle <showar26@utk.edu>; Mention <mention@noreply.github.com> Subject: Re: [ElucidataInc/ElMaven] El-MAVEN v0.12.0 crashes at 100% using Align function (#1365) [External Email] @showar26<https://github.com/showar26> Since your sample file size is that small, could it be that these are from an MRM experiment? If so, then I am not surprised at this behaviour. Neither of the alignment algorithms work for MRM (or any kind of pure MS2) data yet. But if these are samples from a full-scan MS1 experiment, would it be possible for you to share a small subset of those files with us, with which this crash reproduces consistently? You can share them over email (elmaven@elucidata.io<mailto:elmaven@elucidata.io>), or however else you like. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub<#1365 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ASJSH6IJO5YRWYCCPNF3L4DSXKMJVANCNFSM4VNTHGDQ>.

[saif-el]

@showar26 Sorry I missed this somehow all this time. If you use Dropbox you should be able to upload your zip file and then share a link with us on email. If you use Gmail, it is even easier to attach Google Drive items. This help page shows how.