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ERROR: dependency 'rgdal' is not available for package 'EMODnetBiocheck' #39

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lucalamoni opened this issue Jan 26, 2024 · 2 comments
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@lucalamoni
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Hi,
I get this error when trying to install "EMODnetBiocheck" and I think it's due to the fact that "rgdal" has been retired from CRAN.
I have found this thread https://community.rstudio.com/t/retirement-of-rgeos-rgdal-maptools/134989 that suggests moving to "sf" or "terra" to have more modern functions analogous to the rgdal ones.
Thank you for your help!
Best regards
Luca

@bart-v bart-v added the bug Something isn't working label Jan 26, 2024
@colinpmillar
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colinpmillar commented Jan 26, 2024

Work around in the mean time (requires rtools)

library(remotes)
install_github("cran/rgdal")
install_github("EMODnet/EMODnetBiocheck")

@rubenpp7
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rubenpp7 commented Jan 26, 2024

Hi @lucalamoni,

working on it
related to iobis/obistools#90

for the moment,
@colinpmillar thanks for the workaround

Another workaround is to use the webapp -> https://rshiny.lifewatch.be/BioCheck/

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