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check warnings in testbank #803

Open
Tracked by #847
veenstrajelmer opened this issue Mar 13, 2024 · 0 comments
Open
Tracked by #847

check warnings in testbank #803

veenstrajelmer opened this issue Mar 13, 2024 · 0 comments

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@veenstrajelmer
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veenstrajelmer commented Mar 13, 2024

Warnings from system/unittests at 2024-05-14 in github python 3.12 action.

Many warnings because of usage of deprecated pkg_resources, e.g. by cdsapi that are also documented in ecmwf/cdsapi#89:

../../../../../opt/hostedtoolcache/Python/3.12.3/x64/lib/python3.12/site-packages/cdsapi/api.py:17
  /opt/hostedtoolcache/Python/3.12.3/x64/lib/python3.12/site-packages/cdsapi/api.py:17: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
    import pkg_resources

Many others by pydap, seems to be documented in pydap/pydap#319:

../../../../../opt/hostedtoolcache/Python/3.12.3/x64/lib/python3.12/site-packages/pkg_resources/__init__.py:2832
  /opt/hostedtoolcache/Python/3.12.3/x64/lib/python3.12/site-packages/pkg_resources/__init__.py:2832: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('pydap')`.
  Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
    declare_namespace(pkg)

../../../../../opt/hostedtoolcache/Python/3.12.3/x64/lib/python3.12/site-packages/pkg_resources/__init__.py:2832
  /opt/hostedtoolcache/Python/3.12.3/x64/lib/python3.12/site-packages/pkg_resources/__init__.py:2832: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('pydap.responses')`.
  Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
    declare_namespace(pkg)

../../../../../opt/hostedtoolcache/Python/3.12.3/x64/lib/python3.12/site-packages/pkg_resources/__init__.py:2317
../../../../../opt/hostedtoolcache/Python/3.12.3/x64/lib/python3.12/site-packages/pkg_resources/__init__.py:2317
../../../../../opt/hostedtoolcache/Python/3.12.3/x64/lib/python3.12/site-packages/pkg_resources/__init__.py:2317
  /opt/hostedtoolcache/Python/3.12.3/x64/lib/python3.12/site-packages/pkg_resources/__init__.py:2317: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('pydap')`.
  Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
    declare_namespace(parent)

../../../../../opt/hostedtoolcache/Python/3.12.3/x64/lib/python3.12/site-packages/pkg_resources/__init__.py:2832
  /opt/hostedtoolcache/Python/3.12.3/x64/lib/python3.12/site-packages/pkg_resources/__init__.py:2832: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('pydap.handlers')`.
  Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
    declare_namespace(pkg)

../../../../../opt/hostedtoolcache/Python/3.12.3/x64/lib/python3.12/site-packages/pkg_resources/__init__.py:2832
  /opt/hostedtoolcache/Python/3.12.3/x64/lib/python3.12/site-packages/pkg_resources/__init__.py:2832: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('pydap.tests')`.
  Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
    declare_namespace(pkg)

Caused by xugrid, reported in Deltares/xugrid#194:

../../../../../opt/hostedtoolcache/Python/3.12.3/x64/lib/python3.12/site-packages/xugrid/data/sample_data.py:16
  /opt/hostedtoolcache/Python/3.12.3/x64/lib/python3.12/site-packages/xugrid/data/sample_data.py:16: DeprecationWarning: pathlib.Path.__enter__() is deprecated and scheduled for removal in Python 3.13; Path objects as a context manager is a no-op
    with importlib.resources.files("xugrid.data") as path:

Caused by pydantic:

../../../../../opt/hostedtoolcache/Python/3.12.3/x64/lib/python3.12/site-packages/pydantic/v1/fields.py:437
  /opt/hostedtoolcache/Python/3.12.3/x64/lib/python3.12/site-packages/pydantic/v1/fields.py:437: DeprecationWarning: datetime.datetime.utcnow() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.now(datetime.UTC).
    return smart_deepcopy(self.default) if self.default_factory is None else self.default_factory()

Caused by copernicusmarine, reported to helpdesk on 16-5-2024:

tests/test_download.py: 11 warnings
tests/test_observations.py: 20 warnings
  /opt/hostedtoolcache/Python/3.12.3/x64/lib/python3.12/site-packages/cachier/core.py:222: DeprecationWarning: `ignore_cache` is deprecated and will be removed in a future release, use `cachier__` alternative instead.
    ignore_cache = _pop_kwds_with_deprecation(

tests/test_download.py::test_download_cmems_my
tests/test_observations.py::test_ssh_retrieve_data[cmems]
  /opt/hostedtoolcache/Python/3.12.3/x64/lib/python3.12/site-packages/aiohttp/connector.py:776: DeprecationWarning: The object should be created within an async function
    super().__init__(

tests/test_download.py::test_download_cmems_my
tests/test_observations.py::test_ssh_retrieve_data[cmems]
  /opt/hostedtoolcache/Python/3.12.3/x64/lib/python3.12/site-packages/aiohttp/connector.py:788: DeprecationWarning: The object should be created within an async function
    resolver = DefaultResolver(loop=self._loop)

tests/test_download.py::test_download_cmems_my
tests/test_observations.py::test_ssh_retrieve_data[cmems]
  /opt/hostedtoolcache/Python/3.12.3/x64/lib/python3.12/site-packages/copernicusmarine/core_functions/sessions.py:36: DeprecationWarning: The object should be created within an async function
    return aiohttp.ClientSession(connector=connector, trust_env=TRUST_ENV)

tests/test_download.py::test_download_cmems_my
tests/test_observations.py::test_ssh_retrieve_data[cmems]
  /opt/hostedtoolcache/Python/3.12.3/x64/lib/python3.12/site-packages/aiohttp/cookiejar.py:84: DeprecationWarning: The object should be created within an async function
    super().__init__(loop=loop)

tests/test_download.py::test_download_cmems_my
tests/test_download.py::test_download_cmems_my
tests/test_download.py::test_download_cmems_my
tests/test_download.py::test_download_cmems_forecast
tests/test_download.py::test_download_cmems_forecast
  /opt/hostedtoolcache/Python/3.12.3/x64/lib/python3.12/site-packages/copernicusmarine/core_functions/services_utils.py:538: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
    logger.warn(

Caused by dfm_tools:

tests/test_interpolate_grid2bnd.py::test_interp_uds_to_plipoints
  /opt/hostedtoolcache/Python/3.12.3/x64/lib/python3.12/site-packages/dask/array/reductions.py:654: RuntimeWarning: All-NaN slice encountered
    return np.nanmax(x_chunk, axis=axis, keepdims=keepdims)

tests/test_observations.py::test_ssh_netcdf_overview
  /home/runner/work/dfm_tools/dfm_tools/dfm_tools/observations.py:1053: FutureWarning: 'H' is deprecated and will be removed in a future version, please use 'h' instead.
    time_hr_uniq = ds_slice.time.to_pandas().index.round("H").drop_duplicates()
This was referenced Mar 13, 2024
@veenstrajelmer veenstrajelmer changed the title check FutureWarnings in testbank check warnings in testbank May 16, 2024
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