mesh2d_delete doesn't delete mesh2d_node_z

[DanielTollenaar]

Describe the bug
When clipping a netcdf over a geometrylist the mesh2d_node_x, mesh2d_node_y are clipped, but mesh2d_node_z isn't

To Reproduce
Steps to reproduce the behavior:

1. Download the mesh and reproduce-script we've created: https://we.tl/t-XHuUUF83RC
2. Run the clip_mesh.py executing the code below (we use hydrolib-core to read the nc-file):

from pathlib import Path
import numpy as np
from meshkernel import GeometryList
import meshkernel as mk
from hydrolib.core.dflowfm.net.models import Network
 
nc_path = Path(__file__).parent / "ovd-j98_6-v1a_net.nc"

# read mesh using hydrolib-core

network = Network.from_file(Path(nc_path))
mesh2d = network._mesh2d

# show node x/y/z
print("before")
print(f"x: {mesh2d.mesh2d_node_x.shape}")
print(f"y: {mesh2d.mesh2d_node_y.shape}")
print(f"z: {mesh2d.mesh2d_node_z.shape}")

# define gometrylist
x_coordinates = np.array(
    [219032.36821211,
     219415.05146748,
     236135.84080332,
     257422.06085974,
     257935.46607711,
     221483.69564399,
     219032.36821211],
     dtype=np.double)

y_coordinates = np.array(
    [502669.83347292,
     504635.40577414,
     520870.43426807,
     522115.73282761,
     511205.87195854,
     495803.7154375,
     502669.83347292],
     dtype=np.double)

geometrylist = GeometryList(x_coordinates, y_coordinates)

# clip mesh
mesh2d.meshkernel.mesh2d_delete(
    geometry_list=geometrylist,
    delete_option=mk.DeleteMeshOption.INSIDE_NOT_INTERSECTED,
    invert_deletion=True,
)


# show_result
print("after")
print(f"x: {mesh2d.mesh2d_node_x.shape}")
print(f"y: {mesh2d.mesh2d_node_y.shape}")
print(f"z: {mesh2d.mesh2d_node_z.shape}")

3. Note the size of mesh_node2d_x, mesh_node2d_y and mesh_node2d_z before and after mesh2d_delete:
   

Expected behavior
A length of mesh2d_node_z of 226161 as are mesh2d_node_x and mesh2d_node_y.

Screenshots
We do think deletion of x and y is as expected. Running network.plot() after executing the script above gives a plausible result:

Version info (please complete the following information):

• OS: Windows
• Versions:
  • Python: 3.8.19
  • hydrolib.core: 0.7.0
  • meshkernel: 4.1.0