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Embedded Tomcat not starting up #9476

Closed
vins01-4science opened this issue Apr 15, 2024 · 4 comments · Fixed by #9505
Closed

Embedded Tomcat not starting up #9476

vins01-4science opened this issue Apr 15, 2024 · 4 comments · Fixed by #9505
Assignees
@tdonohue
Labels
backend: Hibernate related to Hibernate or HQL backend: Solr Related to the Solr index bug help wanted Needs a volunteer to claim to move forward high priority testathon Reported by a tester during Community Testathon
Milestone
8.0

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@vins01-4science
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vins01-4science commented Apr 15, 2024 •
edited

Bug 👾

In the latest DSpace version, I am not able to startup the spring-boot with Embedded Tomcat environment, i.e. server-boot project.
I tried to run it, accordingly to the wiki, but i get some errors in console and event inside the dspace.log file.

Steps to Reproduce 📝

  1. Clone the main repo
  2. Run the mvn command to build and package the environment
$ mvn clean package -U
  1. Open the target folder that has been generated inside the dspace/modules/server-boot/target
  2. Try to execute the jar using the java runtime (You should use a 17+ version)
$ java -jar server-boot-8.0-SNAPSHOT.jar --dspace.dir="{dspace8-installdir}" --logging.config-file="file://{dspace8-installdir}/config/log4j2.xml"

Errors ☢️

The first message I can see inside the console after the spring-boot logo comes in is the following:

ANTLR Tool version 4.13.0 used for code generation does not match the current runtime version 4.5.1ANTLR Runtime version 4.13.0 used for parser compilation does not match the current runtime version 4.5.1(base)

And this is due to a wrong version of ANTLR used by the project. In fact, inside hibernate-core we are using the antlr4-runtime:4.13.0 meanwhile inside the solr-core we are using the version 4.5.1-1. This latest one is marked with runtime target, so it will be used during runtime.

After replacing it with the right version, the errors inside the log are still there:

Log Errors 

2024-04-15 12:28:25,284 ERROR unknown unknown org.springframework.boot.SpringApplication @ Application run failed
org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'authenticationRestController': Unsatisfied dependency expressed through field 'converter': Error creating bean with name 'converterService': Unsatisfied dependency expressed through field 'converters': Error creating bean with name 'workflowItemConverter' defined in file [/home/vins/dev/projects/DSpace7/dspace/dspace-server-webapp/target/classes/org/dspace/app/rest/converter/WorkflowItemConverter.class]: Failed to instantiate [org.dspace.app.rest.converter.WorkflowItemConverter]: Constructor threw exception
	at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.resolveFieldValue(AutowiredAnnotationBeanPostProcessor.java:787) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.inject(AutowiredAnnotationBeanPostProcessor.java:767) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.annotation.InjectionMetadata.inject(InjectionMetadata.java:145) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor.postProcessProperties(AutowiredAnnotationBeanPostProcessor.java:508) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1419) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:599) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:522) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:326) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:234) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:324) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:200) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:975) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:962) ~[spring-context-6.1.5.jar:6.1.5]
	at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:624) ~[spring-context-6.1.5.jar:6.1.5]
	at org.springframework.boot.web.servlet.context.ServletWebServerApplicationContext.refresh(ServletWebServerApplicationContext.java:146) ~[spring-boot-3.2.4.jar:3.2.4]
	at org.springframework.boot.SpringApplication.refresh(SpringApplication.java:754) [spring-boot-3.2.4.jar:3.2.4]
	at org.springframework.boot.SpringApplication.refreshContext(SpringApplication.java:456) [spring-boot-3.2.4.jar:3.2.4]
	at org.springframework.boot.SpringApplication.run(SpringApplication.java:334) [spring-boot-3.2.4.jar:3.2.4]
	at org.springframework.boot.builder.SpringApplicationBuilder.run(SpringApplicationBuilder.java:149) [spring-boot-3.2.4.jar:3.2.4]
	at org.dspace.app.ServerBootApplication.main(ServerBootApplication.java:30) [classes/:?]
Caused by: org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'converterService': Unsatisfied dependency expressed through field 'converters': Error creating bean with name 'workflowItemConverter' defined in file [/home/vins/dev/projects/DSpace7/dspace/dspace-server-webapp/target/classes/org/dspace/app/rest/converter/WorkflowItemConverter.class]: Failed to instantiate [org.dspace.app.rest.converter.WorkflowItemConverter]: Constructor threw exception
	at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.resolveFieldValue(AutowiredAnnotationBeanPostProcessor.java:787) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.inject(AutowiredAnnotationBeanPostProcessor.java:767) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.annotation.InjectionMetadata.inject(InjectionMetadata.java:145) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor.postProcessProperties(AutowiredAnnotationBeanPostProcessor.java:508) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1419) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:599) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:522) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:326) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:234) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:324) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:200) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.config.DependencyDescriptor.resolveCandidate(DependencyDescriptor.java:254) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.doResolveDependency(DefaultListableBeanFactory.java:1443) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.resolveDependency(DefaultListableBeanFactory.java:1353) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.resolveFieldValue(AutowiredAnnotationBeanPostProcessor.java:784) ~[spring-beans-6.1.5.jar:6.1.5]
	... 19 more
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'workflowItemConverter' defined in file [/home/vins/dev/projects/DSpace7/dspace/dspace-server-webapp/target/classes/org/dspace/app/rest/converter/WorkflowItemConverter.class]: Failed to instantiate [org.dspace.app.rest.converter.WorkflowItemConverter]: Constructor threw exception
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateBean(AbstractAutowireCapableBeanFactory.java:1317) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1202) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:562) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:522) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:326) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:234) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:324) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:200) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.config.DependencyDescriptor.resolveCandidate(DependencyDescriptor.java:254) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.addCandidateEntry(DefaultListableBeanFactory.java:1689) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.findAutowireCandidates(DefaultListableBeanFactory.java:1653) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.resolveMultipleBeanCollection(DefaultListableBeanFactory.java:1543) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.resolveMultipleBeans(DefaultListableBeanFactory.java:1511) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.doResolveDependency(DefaultListableBeanFactory.java:1392) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.resolveDependency(DefaultListableBeanFactory.java:1353) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.resolveFieldValue(AutowiredAnnotationBeanPostProcessor.java:784) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.inject(AutowiredAnnotationBeanPostProcessor.java:767) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.annotation.InjectionMetadata.inject(InjectionMetadata.java:145) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor.postProcessProperties(AutowiredAnnotationBeanPostProcessor.java:508) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1419) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:599) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:522) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:326) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:234) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:324) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:200) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.config.DependencyDescriptor.resolveCandidate(DependencyDescriptor.java:254) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.doResolveDependency(DefaultListableBeanFactory.java:1443) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.resolveDependency(DefaultListableBeanFactory.java:1353) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.resolveFieldValue(AutowiredAnnotationBeanPostProcessor.java:784) ~[spring-beans-6.1.5.jar:6.1.5]
	... 19 more
Caused by: org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.dspace.app.rest.converter.WorkflowItemConverter]: Constructor threw exception
	at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:221) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:88) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateBean(AbstractAutowireCapableBeanFactory.java:1311) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1202) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:562) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:522) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:326) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:234) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:324) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:200) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.config.DependencyDescriptor.resolveCandidate(DependencyDescriptor.java:254) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.addCandidateEntry(DefaultListableBeanFactory.java:1689) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.findAutowireCandidates(DefaultListableBeanFactory.java:1653) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.resolveMultipleBeanCollection(DefaultListableBeanFactory.java:1543) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.resolveMultipleBeans(DefaultListableBeanFactory.java:1511) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.doResolveDependency(DefaultListableBeanFactory.java:1392) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.resolveDependency(DefaultListableBeanFactory.java:1353) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.resolveFieldValue(AutowiredAnnotationBeanPostProcessor.java:784) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.inject(AutowiredAnnotationBeanPostProcessor.java:767) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.annotation.InjectionMetadata.inject(InjectionMetadata.java:145) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor.postProcessProperties(AutowiredAnnotationBeanPostProcessor.java:508) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1419) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:599) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:522) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:326) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:234) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:324) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:200) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.config.DependencyDescriptor.resolveCandidate(DependencyDescriptor.java:254) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.doResolveDependency(DefaultListableBeanFactory.java:1443) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.resolveDependency(DefaultListableBeanFactory.java:1353) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.resolveFieldValue(AutowiredAnnotationBeanPostProcessor.java:784) ~[spring-beans-6.1.5.jar:6.1.5]
	... 19 more
Caused by: java.lang.NullPointerException: Cannot invoke "org.dspace.submit.factory.SubmissionServiceFactory.getSubmissionConfigService()" because the return value of "org.dspace.submit.factory.SubmissionServiceFactory.getInstance()" is null
	at org.dspace.app.rest.converter.AInprogressItemConverter.(AInprogressItemConverter.java:63) ~[classes/:?]
	at org.dspace.app.rest.converter.WorkflowItemConverter.(WorkflowItemConverter.java:29) ~[classes/:?]
	at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) ~[?:?]
	at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:77) ~[?:?]
	at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) ~[?:?]
	at java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Constructor.java:499) ~[?:?]
	at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:480) ~[?:?]
	at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:195) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:88) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateBean(AbstractAutowireCapableBeanFactory.java:1311) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1202) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:562) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:522) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:326) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:234) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:324) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:200) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.config.DependencyDescriptor.resolveCandidate(DependencyDescriptor.java:254) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.addCandidateEntry(DefaultListableBeanFactory.java:1689) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.findAutowireCandidates(DefaultListableBeanFactory.java:1653) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.resolveMultipleBeanCollection(DefaultListableBeanFactory.java:1543) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.resolveMultipleBeans(DefaultListableBeanFactory.java:1511) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.doResolveDependency(DefaultListableBeanFactory.java:1392) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.resolveDependency(DefaultListableBeanFactory.java:1353) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.resolveFieldValue(AutowiredAnnotationBeanPostProcessor.java:784) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.inject(AutowiredAnnotationBeanPostProcessor.java:767) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.annotation.InjectionMetadata.inject(InjectionMetadata.java:145) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor.postProcessProperties(AutowiredAnnotationBeanPostProcessor.java:508) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1419) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:599) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:522) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:326) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:234) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:324) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:200) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.config.DependencyDescriptor.resolveCandidate(DependencyDescriptor.java:254) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.doResolveDependency(DefaultListableBeanFactory.java:1443) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.resolveDependency(DefaultListableBeanFactory.java:1353) ~[spring-beans-6.1.5.jar:6.1.5]
	at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.resolveFieldValue(AutowiredAnnotationBeanPostProcessor.java:784) ~[spring-beans-6.1.5.jar:6.1.5]
	... 19 more

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Related Work on DSpace
@vins01-4science vins01-4science added bug needs triage New issue needs triage and/or scheduling backend: Solr Related to the Solr index backend: Hibernate related to Hibernate or HQL labels Apr 15, 2024
@tdonohue
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@vins01-4science : In the very log exception stacktrace you shared, I noticed it ends with this:

Caused by: java.lang.NullPointerException: Cannot invoke "org.dspace.submit.factory.SubmissionServiceFactory.getSubmissionConfigService()" because the return value of "org.dspace.submit.factory.SubmissionServiceFactory.getInstance()" is null at org.dspace.app.rest.converter.AInprogressItemConverter.(AInprogressItemConverter.java:63

That appears to be issue #9217. It tends to occur when a prior error causes DSpace to crash on startup. I've seen it mostly when Solr fails to startup (see #9217), but it also can sometimes occur if the database crashes. In any case, the NullPointerException is usually a snowballing exception. It's misleading because the actual error is usually in the dspace.log file before that NullPointerException.

I just wanted to mention this in case it's helpful in debugging the issue with Embedded Tomcat.

For now, I'll pull this ticket over to the 8.0 board. Hopefully we can find a way to fix this prior to the release. Needs a volunteer

@tdonohue tdonohue added high priority help wanted Needs a volunteer to claim to move forward testathon Reported by a tester during Community Testathon and removed needs triage New issue needs triage and/or scheduling labels Apr 15, 2024
@Navigator9836
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Hi, I have come upon the same issue.

As running "mvn dependency:tree -Dverbose -Dincludes=org.antlr" gave:

[INFO] --- maven-dependency-plugin:3.6.1:tree (default-cli) @ server-boot ---
[INFO] org.dspace:server-boot:jar:8.0-rc1
[INFO] +- org.dspace:dspace-api:test-jar:tests:8.0-rc1:test
[INFO] |  \- org.hibernate.orm:hibernate-core:jar:6.4.4.Final:compile (version managed from 6.4.4.Final)
[INFO] |     \- (org.antlr:antlr4-runtime:jar:4.13.0:runtime - omitted for conflict with 4.5.1-1)
[INFO] \- org.apache.solr:solr-core:jar:8.11.3:test
[INFO]    \- org.antlr:antlr4-runtime:jar:4.5.1-1:runtime (scope not updated to runtime)

I aligned with the ANTLR version Hibernate prefers by adding this to pom.xml at the server-boot module level:

        <dependency>
            <groupId>org.antlr</groupId>
            <artifactId>antlr4-runtime</artifactId>
            <version>4.13.0</version> <!-- Enforcing version used by Hibernate -->
        </dependency>

Then rebuilt the project. The warning had gone and I could continue installation with the rest of the steps.

(This comes from DSpace Developers mailing list where I first reported the issue)

@atarix83
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@Navigator9836

could you open a PR?

@tdonohue tdonohue mentioned this issue Apr 26, 2024
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@tdonohue
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@atarix83 and @vins01-4science : I have a fix PR in #9505.

@tdonohue tdonohue self-assigned this Apr 26, 2024
@tdonohue tdonohue added this to the 8.0 milestone Apr 26, 2024
vins01-4science added a commit to 4Science/DSpace that referenced this issue May 2, 2024
@vins01-4science
[DSpace#9505][DSpace#9476] Adds Optional and logs to SubmissionConfig…
120072f 
…ServiceImpl for startup issues
@vins01-4science vins01-4science mentioned this issue May 2, 2024
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Labels
backend: Hibernate related to Hibernate or HQL backend: Solr Related to the Solr index bug help wanted Needs a volunteer to claim to move forward high priority testathon Reported by a tester during Community Testathon
Projects
DSpace 8.0 Release
Status: ✅ Done
Milestone
8.0
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Fix Runnable JAR issues & use it in all Docker images tdonohue/DSpace
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@tdonohue @atarix83 @vins01-4science @Navigator9836