diff --git a/Manifest.toml b/Manifest.toml index b7d5bad6..3237ae61 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -2,7 +2,7 @@ julia_version = "1.8.2" manifest_format = "2.0" -project_hash = "12fa6bebc927072f225d9f097f620a08b879e078" +project_hash = "5c77924c867816a1a286b123d311dd430efedebb" [[deps.AMD]] deps = ["Libdl", "LinearAlgebra", "SparseArrays", "Test"] @@ -57,9 +57,9 @@ version = "6.0.23" [[deps.ArrayInterfaceCore]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "732cddf5c7a3d4e7d4829012042221a724a30674" +git-tree-sha1 = "c46fb7dd1d8ca1d213ba25848a5ec4e47a1a1b08" uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" -version = "0.1.24" +version = "0.1.26" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -75,20 +75,20 @@ uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" [[deps.BenchmarkTools]] deps = ["JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] -git-tree-sha1 = "4c10eee4af024676200bc7752e536f858c6b8f93" +git-tree-sha1 = "d9a9701b899b30332bbcb3e1679c41cce81fb0e8" uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" -version = "1.3.1" +version = "1.3.2" [[deps.BitFlags]] -git-tree-sha1 = "84259bb6172806304b9101094a7cc4bc6f56dbc6" +git-tree-sha1 = "629c6e4a7be8f427d268cebef2a5e3de6c50d462" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.5" +version = "0.1.6" [[deps.BlockDiagonals]] deps = ["ChainRulesCore", "FillArrays", "FiniteDifferences", "LinearAlgebra"] -git-tree-sha1 = "c70a29b23e304581a020c42f66d1d9d0ee5e40a9" +git-tree-sha1 = "2826da72eacf85bf035d08619946803e18af42d0" uuid = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0" -version = "0.1.37" +version = "0.1.39" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -126,9 +126,9 @@ uuid = "e9e359dc-d701-5aa8-82ae-09bbf812ea83" version = "10.0.130+3" [[deps.Cassette]] -git-tree-sha1 = "063b2e77c5537a548c5bf2f44161f1d3e1ab3227" +git-tree-sha1 = "a70f220ea09ec61401745ff338f8fb340420165c" uuid = "7057c7e9-c182-5462-911a-8362d720325c" -version = "0.3.10" +version = "0.3.11" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -200,9 +200,9 @@ uuid = "7445602f-e544-4518-8976-18f8e8ae6cdb" version = "0.2.0" [[deps.DataAPI]] -git-tree-sha1 = "46d2680e618f8abd007bce0c3026cb0c4a8f2032" +git-tree-sha1 = "e08915633fcb3ea83bf9d6126292e5bc5c739922" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.12.0" +version = "1.13.0" [[deps.DataDeps]] deps = ["HTTP", "Libdl", "Reexport", "SHA", "p7zip_jll"] @@ -239,9 +239,9 @@ version = "1.1.0" [[deps.DiffRules]] deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "8b7a4d23e22f5d44883671da70865ca98f2ebf9d" +git-tree-sha1 = "9a95659c283c9018ea99e017aa9e13b7e89fadd2" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.12.0" +version = "1.12.1" [[deps.Distances]] deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] @@ -255,9 +255,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "04db820ebcfc1e053bd8cbb8d8bccf0ff3ead3f7" +git-tree-sha1 = "bee795cdeabc7601776abbd6b9aac2ca62429966" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.76" +version = "0.25.77" [[deps.DocStringExtensions]] deps = ["LibGit2"] @@ -333,9 +333,9 @@ version = "0.13.5" [[deps.FiniteDiff]] deps = ["ArrayInterfaceCore", "LinearAlgebra", "Requires", "Setfield", "SparseArrays", "StaticArrays"] -git-tree-sha1 = "5a2cff9b6b77b33b89f3d97a4d367747adce647e" +git-tree-sha1 = "bb61d9e5085784fe453f70c97b23964c5bf36942" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.15.0" +version = "2.16.0" [[deps.FiniteDifferences]] deps = ["ChainRulesCore", "LinearAlgebra", "Printf", "Random", "Richardson", "SparseArrays", "StaticArrays"] @@ -345,9 +345,9 @@ version = "0.12.25" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "187198a4ed8ccd7b5d99c41b69c679269ea2b2d4" +git-tree-sha1 = "10fa12fe96e4d76acfa738f4df2126589a67374f" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.32" +version = "0.10.33" [[deps.Future]] deps = ["Random"] @@ -367,9 +367,9 @@ version = "0.1.2" [[deps.GPUCompiler]] deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "TimerOutputs", "UUIDs"] -git-tree-sha1 = "323949b0bbdf38c93d2ea1f7d3e68ff163c3f081" +git-tree-sha1 = "76f70a337a153c1632104af19d29023dbb6f30dd" uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" -version = "0.16.5" +version = "0.16.6" [[deps.GaussianProcesses]] deps = ["Distances", "Distributions", "ElasticArrays", "ElasticPDMats", "FastGaussQuadrature", "ForwardDiff", "LinearAlgebra", "Optim", "PDMats", "Printf", "ProgressMeter", "Random", "RecipesBase", "ScikitLearnBase", "SpecialFunctions", "StaticArrays", "Statistics", "StatsFuns"] @@ -390,9 +390,9 @@ version = "1.12.2+2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "Dates", "IniFile", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "a97d47758e933cd5fe5ea181d178936a9fc60427" +git-tree-sha1 = "8c7e6b82abd41364b8ffe40ffc63b33e590c8722" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.5.1" +version = "1.5.3" [[deps.IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" @@ -401,9 +401,9 @@ version = "0.1.1" [[deps.IncompleteLU]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "a22b92ffedeb499383720dfedcd473deb9608b62" +git-tree-sha1 = "6c676e79f98abb6d33fa28122cad099f1e464afe" uuid = "40713840-3770-5561-ab4c-a76e7d0d7895" -version = "0.2.0" +version = "0.2.1" [[deps.IniFile]] git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" @@ -444,9 +444,9 @@ version = "1.0.0" [[deps.JLD2]] deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "Printf", "Reexport", "TranscodingStreams", "UUIDs"] -git-tree-sha1 = "1c3ff7416cb727ebf4bab0491a56a296d7b8cf1d" +git-tree-sha1 = "acb4be8227e1f3ff890d564d55dcde9cf92e4337" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.4.25" +version = "0.4.26" [[deps.JLLWrappers]] deps = ["Preferences"] @@ -555,9 +555,9 @@ version = "2022.2.0+0" [[deps.MPI]] deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "Requires", "Serialization", "Sockets"] -git-tree-sha1 = "067fd6ff731c8b414b5c1f3de723d8aed3b4198f" +git-tree-sha1 = "649b1c447a6c737d3bec80d0b72ccb7aba82310d" uuid = "da04e1cc-30fd-572f-bb4f-1f8673147195" -version = "0.20.3" +version = "0.20.4" [[deps.MPICH_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "Pkg", "TOML"] @@ -631,9 +631,9 @@ version = "1.0.5" [[deps.NCDatasets]] deps = ["CFTime", "DataStructures", "Dates", "NetCDF_jll", "NetworkOptions", "Printf"] -git-tree-sha1 = "1818d54a489492517841c2cb87475ba20918264c" +git-tree-sha1 = "8d5cd8ff530228bf172f7d4e91d9ae9e8b8e8ad3" uuid = "85f8d34a-cbdd-5861-8df4-14fed0d494ab" -version = "0.12.8" +version = "0.12.9" [[deps.NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] @@ -659,9 +659,9 @@ version = "1.2.0" [[deps.Oceananigans]] deps = ["AMGX", "Adapt", "AlgebraicMultigrid", "CUDA", "CUDAKernels", "Crayons", "CubedSphere", "Dates", "DocStringExtensions", "FFTW", "Glob", "IncompleteLU", "InteractiveUtils", "IterativeSolvers", "JLD2", "KernelAbstractions", "LinearAlgebra", "Logging", "MPI", "NCDatasets", "OffsetArrays", "OrderedCollections", "PencilArrays", "PencilFFTs", "Pkg", "Printf", "Random", "Rotations", "SeawaterPolynomials", "SparseArrays", "Statistics", "StructArrays", "Tullio"] -git-tree-sha1 = "d791b9d1e6d32d916e6bdcbb5984c29bfa6ed7d6" +git-tree-sha1 = "569005a95a472facb8e0bc35d4c3b29308eb82e7" uuid = "9e8cae18-63c1-5223-a75c-80ca9d6e9a09" -version = "0.78.1" +version = "0.78.2" [[deps.OffsetArrays]] deps = ["Adapt"] @@ -693,15 +693,15 @@ version = "4.1.3+3" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "3c3c4a401d267b04942545b1e964a20279587fd7" +git-tree-sha1 = "5628f092c6186a80484bfefdf89ff64efdaec552" uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.3.0" +version = "1.3.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e60321e3f2616584ff98f0a4f18d98ae6f89bbb3" +git-tree-sha1 = "f6e9dba33f9f2c44e08a020b0caf6903be540004" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.17+0" +version = "1.1.19+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -733,10 +733,10 @@ uuid = "d96e819e-fc66-5662-9728-84c9c7592b0a" version = "0.12.3" [[deps.Parsers]] -deps = ["Dates"] -git-tree-sha1 = "6c01a9b494f6d2a9fc180a08b182fcb06f0958a0" +deps = ["Dates", "SnoopPrecompile"] +git-tree-sha1 = "cceb0257b662528ecdf0b4b4302eb00e767b38e7" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.4.2" +version = "2.5.0" [[deps.PencilArrays]] deps = ["Adapt", "ArrayInterface", "JSON3", "LinearAlgebra", "MPI", "OffsetArrays", "Random", "Reexport", "Requires", "StaticArrays", "StaticPermutations", "Strided", "TimerOutputs", "VersionParsing"] @@ -861,22 +861,28 @@ uuid = "6038ab10-8711-5258-84ad-4b1120ba62dc" version = "1.3.3" [[deps.SCS]] -deps = ["MathOptInterface", "Requires", "SCS_GPU_jll", "SCS_jll", "SparseArrays"] -git-tree-sha1 = "8d908b7c81e199ee92d17b6192849e8c43d2f31d" +deps = ["MathOptInterface", "Requires", "SCS_GPU_jll", "SCS_MKL_jll", "SCS_jll", "SparseArrays"] +git-tree-sha1 = "2e3ca40559ecaed6ffe9410b06aabcc1e087215d" uuid = "c946c3f1-0d1f-5ce8-9dea-7daa1f7e2d13" -version = "1.1.2" +version = "1.1.3" [[deps.SCS_GPU_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "OpenBLAS32_jll", "Pkg"] -git-tree-sha1 = "f912271ecccb00acaddfab2943e9b33d5ec36d3b" +git-tree-sha1 = "2b3799ff650d0530a19c2a3bd4b158a4f3e4581a" uuid = "af6e375f-46ec-5fa0-b791-491b0dfa44a4" -version = "3.2.0+0" +version = "3.2.1+0" + +[[deps.SCS_MKL_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "MKL_jll", "Pkg"] +git-tree-sha1 = "a4923177e60fdb7f802e1a42a73d0af400eea163" +uuid = "3f2553a9-4106-52be-b7dd-865123654657" +version = "3.2.2+0" [[deps.SCS_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "OpenBLAS32_jll", "Pkg"] -git-tree-sha1 = "ba5c0d3b23220d3598d2877b4cf913e3fcf8add3" +git-tree-sha1 = "5544538910047c7522908cf87bb0c884a7afff92" uuid = "f4f2fc5b-1d94-523c-97ea-2ab488bedf4b" -version = "3.2.0+0" +version = "3.2.1+0" [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" @@ -933,9 +939,9 @@ version = "2.1.7" [[deps.Static]] deps = ["IfElse"] -git-tree-sha1 = "de4f0a4f049a4c87e4948c04acff37baf1be01a6" +git-tree-sha1 = "03170c1e8a94732c1d835ce4c5b904b4b52cba1c" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "0.7.7" +version = "0.7.8" [[deps.StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] @@ -1036,9 +1042,9 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] -git-tree-sha1 = "9dfcb767e17b0849d6aaf85997c98a5aea292513" +git-tree-sha1 = "f2fd3f288dfc6f507b0c3a2eb3bac009251e548b" uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" -version = "0.5.21" +version = "0.5.22" [[deps.TranscodingStreams]] deps = ["Random", "Test"] diff --git a/Project.toml b/Project.toml index 17f07b90..f622c75b 100644 --- a/Project.toml +++ b/Project.toml @@ -2,7 +2,7 @@ name = "ParameterEstimocean" uuid = "eca81dc5-87a6-4430-aec8-c76695404a43" license = "MIT" authors = ["Climate Modeling Alliance and contributors"] -version = "0.14.0" +version = "0.14.1" [deps] BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0" @@ -37,7 +37,7 @@ GaussianProcesses = "0.12" JLD2 = "0.4" LineSearches = "7" MPI = "0.20" -Oceananigans = "0.78.1" +Oceananigans = "0.78.2" OffsetArrays = "1" OrderedCollections = "1" ProgressBars = "1" diff --git a/docs/Manifest.toml b/docs/Manifest.toml index 880aa651..bbbd8259 100644 --- a/docs/Manifest.toml +++ b/docs/Manifest.toml @@ -2,7 +2,7 @@ julia_version = "1.8.2" manifest_format = "2.0" -project_hash = "e27d565da7866655c4e014d54b9c234f309b67e8" +project_hash = "0100bd869398c5d96dee6efd71757aecb14da70d" [[deps.AMD]] deps = ["Libdl", "LinearAlgebra", "SparseArrays", "Test"] @@ -68,9 +68,9 @@ version = "6.0.23" [[deps.ArrayInterfaceCore]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "732cddf5c7a3d4e7d4829012042221a724a30674" +git-tree-sha1 = "c46fb7dd1d8ca1d213ba25848a5ec4e47a1a1b08" uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" -version = "0.1.24" +version = "0.1.26" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -98,14 +98,14 @@ uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" [[deps.BenchmarkTools]] deps = ["JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] -git-tree-sha1 = "4c10eee4af024676200bc7752e536f858c6b8f93" +git-tree-sha1 = "d9a9701b899b30332bbcb3e1679c41cce81fb0e8" uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" -version = "1.3.1" +version = "1.3.2" [[deps.BitFlags]] -git-tree-sha1 = "84259bb6172806304b9101094a7cc4bc6f56dbc6" +git-tree-sha1 = "629c6e4a7be8f427d268cebef2a5e3de6c50d462" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.5" +version = "0.1.6" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -150,9 +150,9 @@ version = "1.0.5" [[deps.CairoMakie]] deps = ["Base64", "Cairo", "Colors", "FFTW", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "SHA", "SnoopPrecompile"] -git-tree-sha1 = "906cffea7bf8f17098477c435f5b35d867b2c4ef" +git-tree-sha1 = "d5fcc28d94729c8828c7651e81d6b119fe9e87f5" uuid = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0" -version = "0.9.1" +version = "0.9.2" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -167,9 +167,9 @@ uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" version = "0.5.1" [[deps.Cassette]] -git-tree-sha1 = "063b2e77c5537a548c5bf2f44161f1d3e1ab3227" +git-tree-sha1 = "a70f220ea09ec61401745ff338f8fb340420165c" uuid = "7057c7e9-c182-5462-911a-8362d720325c" -version = "0.3.10" +version = "0.3.11" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -276,9 +276,9 @@ uuid = "7445602f-e544-4518-8976-18f8e8ae6cdb" version = "0.2.0" [[deps.DataAPI]] -git-tree-sha1 = "46d2680e618f8abd007bce0c3026cb0c4a8f2032" +git-tree-sha1 = "e08915633fcb3ea83bf9d6126292e5bc5c739922" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.12.0" +version = "1.13.0" [[deps.DataDeps]] deps = ["HTTP", "Libdl", "Reexport", "SHA", "p7zip_jll"] @@ -315,9 +315,9 @@ version = "1.1.0" [[deps.DiffRules]] deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "8b7a4d23e22f5d44883671da70865ca98f2ebf9d" +git-tree-sha1 = "9a95659c283c9018ea99e017aa9e13b7e89fadd2" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.12.0" +version = "1.12.1" [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] @@ -325,9 +325,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "04db820ebcfc1e053bd8cbb8d8bccf0ff3ead3f7" +git-tree-sha1 = "bee795cdeabc7601776abbd6b9aac2ca62429966" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.76" +version = "0.25.77" [[deps.DocStringExtensions]] deps = ["LibGit2"] @@ -426,9 +426,9 @@ version = "0.13.5" [[deps.FiniteDiff]] deps = ["ArrayInterfaceCore", "LinearAlgebra", "Requires", "Setfield", "SparseArrays", "StaticArrays"] -git-tree-sha1 = "5a2cff9b6b77b33b89f3d97a4d367747adce647e" +git-tree-sha1 = "bb61d9e5085784fe453f70c97b23964c5bf36942" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.15.0" +version = "2.16.0" [[deps.FixedPointNumbers]] deps = ["Statistics"] @@ -450,9 +450,9 @@ version = "0.4.2" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "187198a4ed8ccd7b5d99c41b69c679269ea2b2d4" +git-tree-sha1 = "10fa12fe96e4d76acfa738f4df2126589a67374f" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.32" +version = "0.10.33" [[deps.FreeType]] deps = ["CEnum", "FreeType2_jll"] @@ -496,9 +496,9 @@ version = "0.1.2" [[deps.GPUCompiler]] deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "TimerOutputs", "UUIDs"] -git-tree-sha1 = "323949b0bbdf38c93d2ea1f7d3e68ff163c3f081" +git-tree-sha1 = "76f70a337a153c1632104af19d29023dbb6f30dd" uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" -version = "0.16.5" +version = "0.16.6" [[deps.GeoInterface]] deps = ["Extents"] @@ -560,9 +560,9 @@ version = "1.12.2+2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "Dates", "IniFile", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "a97d47758e933cd5fe5ea181d178936a9fc60427" +git-tree-sha1 = "8c7e6b82abd41364b8ffe40ffc63b33e590c8722" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.5.1" +version = "1.5.3" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -607,9 +607,9 @@ version = "3.1.2+0" [[deps.IncompleteLU]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "a22b92ffedeb499383720dfedcd473deb9608b62" +git-tree-sha1 = "6c676e79f98abb6d33fa28122cad099f1e464afe" uuid = "40713840-3770-5561-ab4c-a76e7d0d7895" -version = "0.2.0" +version = "0.2.1" [[deps.IndirectArrays]] git-tree-sha1 = "012e604e1c7458645cb8b436f8fba789a51b257f" @@ -683,9 +683,9 @@ version = "1.0.0" [[deps.JLD2]] deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "Printf", "Reexport", "TranscodingStreams", "UUIDs"] -git-tree-sha1 = "1c3ff7416cb727ebf4bab0491a56a296d7b8cf1d" +git-tree-sha1 = "acb4be8227e1f3ff890d564d55dcde9cf92e4337" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.4.25" +version = "0.4.26" [[deps.JLLWrappers]] deps = ["Preferences"] @@ -870,9 +870,9 @@ version = "2022.2.0+0" [[deps.MPI]] deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "Requires", "Serialization", "Sockets"] -git-tree-sha1 = "067fd6ff731c8b414b5c1f3de723d8aed3b4198f" +git-tree-sha1 = "649b1c447a6c737d3bec80d0b72ccb7aba82310d" uuid = "da04e1cc-30fd-572f-bb4f-1f8673147195" -version = "0.20.3" +version = "0.20.4" [[deps.MPICH_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "Pkg", "TOML"] @@ -900,15 +900,15 @@ version = "0.5.10" [[deps.Makie]] deps = ["Animations", "Base64", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "Distributions", "DocStringExtensions", "FFMPEG", "FileIO", "FixedPointNumbers", "Formatting", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageIO", "InteractiveUtils", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MakieCore", "Markdown", "Match", "MathTeXEngine", "MiniQhull", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "Printf", "Random", "RelocatableFolders", "Serialization", "Showoff", "SignedDistanceFields", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun"] -git-tree-sha1 = "c3d53bc3aaf3b908f47e217e80d723f5af1bcf80" +git-tree-sha1 = "0462fdf13cfad9fa6f23a2fb41da38e7a2aa4908" uuid = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" -version = "0.18.1" +version = "0.18.2" [[deps.MakieCore]] deps = ["Observables"] -git-tree-sha1 = "78611339550d29a783cc781c6ebd79f90b51e78b" +git-tree-sha1 = "c1885d865632e7f37e5a1489a164f44c54fb80c9" uuid = "20f20a25-4f0e-4fdf-b5d1-57303727442b" -version = "0.5.1" +version = "0.5.2" [[deps.MappedArrays]] git-tree-sha1 = "e8b359ef06ec72e8c030463fe02efe5527ee5142" @@ -986,9 +986,9 @@ version = "1.0.5" [[deps.NCDatasets]] deps = ["CFTime", "DataStructures", "Dates", "NetCDF_jll", "NetworkOptions", "Printf"] -git-tree-sha1 = "1818d54a489492517841c2cb87475ba20918264c" +git-tree-sha1 = "8d5cd8ff530228bf172f7d4e91d9ae9e8b8e8ad3" uuid = "85f8d34a-cbdd-5861-8df4-14fed0d494ab" -version = "0.12.8" +version = "0.12.9" [[deps.NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] @@ -1019,15 +1019,15 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "5a9ea4b9430d511980c01e9f7173739595bbd335" +git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.2" +version = "0.5.4" [[deps.Oceananigans]] deps = ["AMGX", "Adapt", "AlgebraicMultigrid", "CUDA", "CUDAKernels", "Crayons", "CubedSphere", "Dates", "DocStringExtensions", "FFTW", "Glob", "IncompleteLU", "InteractiveUtils", "IterativeSolvers", "JLD2", "KernelAbstractions", "LinearAlgebra", "Logging", "MPI", "NCDatasets", "OffsetArrays", "OrderedCollections", "PencilArrays", "PencilFFTs", "Pkg", "Printf", "Random", "Rotations", "SeawaterPolynomials", "SparseArrays", "Statistics", "StructArrays", "Tullio"] -git-tree-sha1 = "d791b9d1e6d32d916e6bdcbb5984c29bfa6ed7d6" +git-tree-sha1 = "569005a95a472facb8e0bc35d4c3b29308eb82e7" uuid = "9e8cae18-63c1-5223-a75c-80ca9d6e9a09" -version = "0.78.1" +version = "0.78.2" [[deps.OffsetArrays]] deps = ["Adapt"] @@ -1077,15 +1077,15 @@ version = "4.1.3+3" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "3c3c4a401d267b04942545b1e964a20279587fd7" +git-tree-sha1 = "5628f092c6186a80484bfefdf89ff64efdaec552" uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.3.0" +version = "1.3.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e60321e3f2616584ff98f0a4f18d98ae6f89bbb3" +git-tree-sha1 = "f6e9dba33f9f2c44e08a020b0caf6903be540004" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.17+0" +version = "1.1.19+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1152,10 +1152,10 @@ uuid = "d96e819e-fc66-5662-9728-84c9c7592b0a" version = "0.12.3" [[deps.Parsers]] -deps = ["Dates"] -git-tree-sha1 = "6c01a9b494f6d2a9fc180a08b182fcb06f0958a0" +deps = ["Dates", "SnoopPrecompile"] +git-tree-sha1 = "cceb0257b662528ecdf0b4b4302eb00e767b38e7" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.4.2" +version = "2.5.0" [[deps.PencilArrays]] deps = ["Adapt", "ArrayInterface", "JSON3", "LinearAlgebra", "MPI", "OffsetArrays", "Random", "Reexport", "Requires", "StaticArrays", "StaticPermutations", "Strided", "TimerOutputs", "VersionParsing"] @@ -1321,31 +1321,37 @@ uuid = "6038ab10-8711-5258-84ad-4b1120ba62dc" version = "1.3.3" [[deps.SCS]] -deps = ["MathOptInterface", "Requires", "SCS_GPU_jll", "SCS_jll", "SparseArrays"] -git-tree-sha1 = "8d908b7c81e199ee92d17b6192849e8c43d2f31d" +deps = ["MathOptInterface", "Requires", "SCS_GPU_jll", "SCS_MKL_jll", "SCS_jll", "SparseArrays"] +git-tree-sha1 = "2e3ca40559ecaed6ffe9410b06aabcc1e087215d" uuid = "c946c3f1-0d1f-5ce8-9dea-7daa1f7e2d13" -version = "1.1.2" +version = "1.1.3" [[deps.SCS_GPU_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "OpenBLAS32_jll", "Pkg"] -git-tree-sha1 = "f912271ecccb00acaddfab2943e9b33d5ec36d3b" +git-tree-sha1 = "2b3799ff650d0530a19c2a3bd4b158a4f3e4581a" uuid = "af6e375f-46ec-5fa0-b791-491b0dfa44a4" -version = "3.2.0+0" +version = "3.2.1+0" + +[[deps.SCS_MKL_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "MKL_jll", "Pkg"] +git-tree-sha1 = "a4923177e60fdb7f802e1a42a73d0af400eea163" +uuid = "3f2553a9-4106-52be-b7dd-865123654657" +version = "3.2.2+0" [[deps.SCS_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "OpenBLAS32_jll", "Pkg"] -git-tree-sha1 = "ba5c0d3b23220d3598d2877b4cf913e3fcf8add3" +git-tree-sha1 = "5544538910047c7522908cf87bb0c884a7afff92" uuid = "f4f2fc5b-1d94-523c-97ea-2ab488bedf4b" -version = "3.2.0+0" +version = "3.2.1+0" [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SIMD]] -git-tree-sha1 = "7dbc15af7ed5f751a82bf3ed37757adf76c32402" +git-tree-sha1 = "bc12e315740f3a36a6db85fa2c0212a848bd239e" uuid = "fdea26ae-647d-5447-a871-4b548cad5224" -version = "3.4.1" +version = "3.4.2" [[deps.ScanByte]] deps = ["Libdl", "SIMD"] @@ -1432,9 +1438,9 @@ version = "0.1.1" [[deps.Static]] deps = ["IfElse"] -git-tree-sha1 = "de4f0a4f049a4c87e4948c04acff37baf1be01a6" +git-tree-sha1 = "03170c1e8a94732c1d835ce4c5b904b4b52cba1c" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "0.7.7" +version = "0.7.8" [[deps.StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] @@ -1542,9 +1548,9 @@ version = "0.6.1" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] -git-tree-sha1 = "9dfcb767e17b0849d6aaf85997c98a5aea292513" +git-tree-sha1 = "f2fd3f288dfc6f507b0c3a2eb3bac009251e548b" uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" -version = "0.5.21" +version = "0.5.22" [[deps.TranscodingStreams]] deps = ["Random", "Test"] diff --git a/docs/Project.toml b/docs/Project.toml index 83384500..fefa8978 100644 --- a/docs/Project.toml +++ b/docs/Project.toml @@ -9,4 +9,4 @@ Literate = "98b081ad-f1c9-55d3-8b20-4c87d4299306" Oceananigans = "9e8cae18-63c1-5223-a75c-80ca9d6e9a09" [compat] -Oceananigans = "0.78.1" +Oceananigans = "0.78.2"