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chaste.supp
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chaste.supp
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# To run a regular memory test
# 1. Configure a cmake
# $ cmake -DCMAKE_BUILD_TYPE=Debug -DChaste_MEMORY_TESTING_CPUS=6 ..
# (or similar)
# 2. Run all tests through Valgrind
# $ cmake --build . --target memtest
# (which effectively uses cmake --build . --target memtest --parallel 6 because of the CPUS etting)
# This takes about 2 hours. All tests should pass, but a memory report will be given at the end
# To run a single test and generate missing suppressions:
# $ mpiexec -np 1 valgrind --leak-check=full --suppressions=../chaste.supp --suppressions=../chaste-legacy.supp --gen-suppressions=all ./heart/test/Test1dMonodomainShannonCvodeBenchmarks
#
# PETSc/OpenMPI
###############
# OpenMPI https://github.com/cpmech/test-openmpi-valgrind
{
PETSc/OpenMPI "Hello world" leak
Memcheck:Leak
match-leak-kinds: definite
fun:calloc
...
fun:orte_init
}
{
PETSc/OpenMPI "Hello world" leak
Memcheck:Leak
match-leak-kinds: definite
fun:malloc
...
fun:_dl_catch_error
}
{
PETSc/OpenMPI "Hello world" leak
Memcheck:Leak
match-leak-kinds: definite
fun:malloc
...
fun:ompi_mpi_finalize
}
{
PETSc/OpenMPI "Hello world" leak
Memcheck:Leak
match-leak-kinds: definite
fun:malloc
...
fun:orte_init
}
# HDF5
######
{
H5F: HDF5 write
Memcheck:Param
pwrite64(buf)
...
fun:H5FD_write
}
{
H5F: HDF5 write on closure
Memcheck:Param
pwrite64(buf)
...
fun:H5Fclose
}
{
PetscFinalize/OpenMPI "Hello world" leak
Memcheck:Leak
match-leak-kinds: definite
fun:malloc
...
fun:PetscFinalize
}
{
PetscInitialize/OpenMPI "Hello world" leak
Memcheck:Leak
match-leak-kinds: definite
...
fun:PetscInitialize
}
{
PetscInitialize <insert_a_suppression_name_here>
Memcheck:Leak
match-leak-kinds: possible
fun:calloc
...
fun:PetscInitialize
}
{
PetscInitialize/OpenMPI "Hello world" leak
Memcheck:Leak
match-leak-kinds: definite
fun:calloc
...
fun:PetscInitialize
}
{
PetscInitialize mpi_init (malloc)
Memcheck:Leak
match-leak-kinds: possible
fun:malloc
...
fun:PetscInitialize
}
{
PetscInitialize/OpenMPI "Hello world" leak
Memcheck:Leak
match-leak-kinds: definite
fun:malloc
...
fun:PetscInitialize
}
{
PetscInitialize <insert_a_suppression_name_here>
Memcheck:Leak
match-leak-kinds: possible
fun:realloc
...
fun:PetscInitialize
}
{
PetscInitialize/OpenMPI "Hello world" leak
Memcheck:Param
setsockopt(optlen)
...
fun:PetscInitialize
}
{
PetscInitialize/OpenMPI "Hello world" leak
Memcheck:Param
socketcall.getsockopt(optlen)
...
fun:PetscInitialize
}
{
PetscInitialize/OpenMPI "Hello world" leak
Memcheck:Param
socketcall.getsockopt(optlen_out)
...
fun:PetscInitialize
}
# Tetgen
########
{
tetgen Memory problem in Tetgen with quadratic meshes
Memcheck:Cond
fun:_ZN6tetgen10tetgenmesh13pointtraverseEv
...
fun:main
}