Changelog

A list of changes per version. When changing something in the develop branch, it should be added here.

[v1.1.0] 2019-08-02

`Changed`

#236 - Always add suffix to contigs at cutup, even when they are not cut.
#254 - Slight cleanup of concoct refine
#258 - New suffices (.concoct_part_XX) are now used for contig parts
#261 - Epsilon argument removed as it was not working and is not very useful
#262 - Rewrote documentation, including installation instructions
#264 - concoct_part_ suffix is enforced in subcontig for coverage script
#264 - Header line is enforced for input for merge_cutup_clustering.py and extract_fasta_bins.py
#267 - Updated documentation

`Added`

#253 - A dockerfile useful to test the conda installation
#258 - Tests for all fundamental scripts, including a new integration test data repository
#259 - This changelog
#262 - Added documentation for the core scripts used with concoct
#265 - A warning is now printed when concoct runs in single threaded mode

`Fixed`

#230 - Enable at least single threaded installation on Mac OSX
#231 - Replace pandas .ix with .loc to fix deprecation warnings
#246 - Limit some dependency version numbers for python 2
#254 - Concoct refine now works with python 3
#258 - Seed tests now working again
#260 - Fix the dockerfile build by adding integration test data