-
Notifications
You must be signed in to change notification settings - Fork 33
/
.travis.yml
101 lines (91 loc) · 5.67 KB
/
.travis.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
language: python
dist: bionic
os:
- linux
services:
- docker
python:
- 3.7
jobs:
include:
- name: Unit tests
before_install: # to overwrite from the main config
- echo "Skip"
install:
- pip install . --constraint ./packaging/constraints/constraints-$TRAVIS_PYTHON_VERSION.txt
before_script: # to overwrite from the main config
- echo "Skip"
script: ./tests/unit_tests/run_unit_tests.sh
after_success:
- coveralls
deploy:
provider: pypi
user: michael_kotliar
password:
secure: 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
on:
tags: true
# Still valid, but soon will be deprecated, if we start using Airflow API
- name: DAG with workflow in a separate file (just one test)
script: cwl-airflow test --suite workflows/tests/conformance_tests.yaml --spin --range 1
- name: DAG with embedded workflow (just one test)
script: cwl-airflow test --suite workflows/tests/conformance_tests.yaml --spin --range 1 --embed
- name: DAG with attached workflow using combined API call (just one test)
script: cwl-airflow test --suite workflows/tests/conformance_tests.yaml --spin --range 1 --combine
- name: DAG with embedded workflow using combined API call (just one test)
script: cwl-airflow test --suite workflows/tests/conformance_tests.yaml --spin --range 1 --embed --combine
# TEST DEPRECATED as it not needed anymore. Everything already got updated.
# - name: Test of `init --upgrade`
# before_install:
# - mkdir -p ~/airflow/dags
# - cp ./tests/data/dags/bam_bedgraph_bigwig_single_old_format.py ~/airflow/dags
# - cp ./tests/data/workflows/bam-bedgraph-bigwig-single.cwl ~/airflow/dags
# install:
# - pip install . --constraint ./packaging/constraints/constraints-$TRAVIS_PYTHON_VERSION.txt
# before_script:
# - cwl-airflow init --upgrade
# - rm -f ~/airflow/dags/bam-bedgraph-bigwig-single.cwl
# script: airflow dags list # to check if all DAGs are correct
# TEST DEPRECATED as the packaging scripts should be replaced
# - name: Test packaging for Ubuntu 18.04, Python 3.6
# install:
# - ./packaging/portable/ubuntu/pack.sh 18.04 3.6 $TRAVIS_BRANCH
# - ls ./packaging/portable/ubuntu/build/
# - tar xzf "./packaging/portable/ubuntu/build/python_3.6_with_cwl_airflow_${TRAVIS_BRANCH}_ubuntu_18.04.tar.gz"
# before_script:
# - ./python3/bin_portable/airflow --help # to generate airflow.cfg
# - sed -i'.backup' -e 's/^executor.*/executor = LocalExecutor/g' ~/airflow/airflow.cfg
# - sed -i'.backup' -e 's/^parsing_processes.*/parsing_processes = 1/g' ~/airflow/airflow.cfg
# - sed -i'.backup' -e 's/^sql_alchemy_pool_enabled.*/sql_alchemy_pool_enabled = False/g' ~/airflow/airflow.cfg
# - sed -i'.backup' -e 's/^dag_dir_list_interval =.*/dag_dir_list_interval = 60/g' ~/airflow/airflow.cfg
# - sed -i'.backup' -e 's/^parallelism =.*/parallelism = 1/g' ~/airflow/airflow.cfg
# - sed -i'.backup' -e 's/^sql_alchemy_conn.*/sql_alchemy_conn = mysql:\/\/airflow:airflow@127.0.0.1:6603\/airflow/g' ~/airflow/airflow.cfg
# - ./python3/bin_portable/cwl-airflow init
# - ./python3/bin_portable/airflow connections add process_report --conn-type http --conn-host localhost --conn-port 3070 # to add process_report connection
# - ./python3/bin_portable/airflow scheduler > /dev/null 2>&1 &
# - ./python3/bin_portable/cwl-airflow api --replay 600 > /dev/null 2>&1 &
# script: ./python3/bin_portable/cwl-airflow test --suite workflows/tests/conformance_tests.yaml --spin --range 1
before_install:
- git clone https://github.com/datirium/workflows.git --recursive
- docker pull mysql/mysql-server:5.7
- docker run -v ~/database:/var/lib/mysql -e MYSQL_ROOT_PASSWORD=airflow -e MYSQL_DATABASE=airflow -e MYSQL_USER=airflow -e MYSQL_PASSWORD=airflow -p 6603:3306 -d mysql/mysql-server:5.7 --explicit-defaults-for-timestamp=1
install:
- pip install ".[mysql]" --constraint ./packaging/constraints/constraints-$TRAVIS_PYTHON_VERSION.txt
before_script:
- airflow --help # to generate airflow.cfg
- sed -i'.backup' -e 's/^executor.*/executor = LocalExecutor/g' ~/airflow/airflow.cfg
- sed -i'.backup' -e 's/^parsing_processes.*/parsing_processes = 1/g' ~/airflow/airflow.cfg
- sed -i'.backup' -e 's/^sql_alchemy_pool_enabled.*/sql_alchemy_pool_enabled = False/g' ~/airflow/airflow.cfg
- sed -i'.backup' -e 's/^dag_dir_list_interval =.*/dag_dir_list_interval = 60/g' ~/airflow/airflow.cfg
- sed -i'.backup' -e 's/^parallelism =.*/parallelism = 1/g' ~/airflow/airflow.cfg
- sed -i'.backup' -e 's/^sql_alchemy_conn.*/sql_alchemy_conn = mysql:\/\/airflow:airflow@127.0.0.1:6603\/airflow/g' ~/airflow/airflow.cfg
- cwl-airflow init
- airflow connections add process_report --conn-type http --conn-host localhost --conn-port 3070 # to add process_report connection
- airflow scheduler > /dev/null 2>&1 &
- cwl-airflow api --replay 600 > /dev/null 2>&1 &
branches:
only:
- master
- /^([1-9]\d*!)?(0|[1-9]\d*)(\.(0|[1-9]\d*))*((a|b|rc)(0|[1-9]\d*))?(\.post(0|[1-9]\d*))?(\.dev(0|[1-9]\d*))?$/
notifications:
email: false