Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

line 487: syntax error near unexpected token `>' #27

Open
ne1al opened this issue Apr 2, 2023 · 0 comments
Open

line 487: syntax error near unexpected token `>' #27

ne1al opened this issue Apr 2, 2023 · 0 comments

Comments

@ne1al
Copy link

ne1al commented Apr 2, 2023

Hi,
I installed plasmidID using bioconda in a separate conda environment and I tried to run it using the below command in which I supplied file names with their directory path. Kindly advise
plasmidID \ -1 SAMPLE_R1.fastq.gz \ -2 SAMPLE_R2.fastq.gz \ -d YYYY-MM-DD_plasmids.fasta \ -c SAMPLE_assembled_contigs.fasta \ --no-trim \ -s SAMPLE
All dependencies are installed, however, I get this error
line 487: syntax error near unexpected token >'`
I am attaching the log file
plasmidID.log

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant