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Hi,
I installed plasmidID using bioconda in a separate conda environment and I tried to run it using the below command in which I supplied file names with their directory path. Kindly advise plasmidID \ -1 SAMPLE_R1.fastq.gz \ -2 SAMPLE_R2.fastq.gz \ -d YYYY-MM-DD_plasmids.fasta \ -c SAMPLE_assembled_contigs.fasta \ --no-trim \ -s SAMPLE
All dependencies are installed, however, I get this error line 487: syntax error near unexpected token >'`
I am attaching the log file plasmidID.log
The text was updated successfully, but these errors were encountered:
Hi,
I installed plasmidID using bioconda in a separate conda environment and I tried to run it using the below command in which I supplied file names with their directory path. Kindly advise
plasmidID \ -1 SAMPLE_R1.fastq.gz \ -2 SAMPLE_R2.fastq.gz \ -d YYYY-MM-DD_plasmids.fasta \ -c SAMPLE_assembled_contigs.fasta \ --no-trim \ -s SAMPLE
All dependencies are installed, however, I get this error
line 487: syntax error near unexpected token
>'`I am attaching the log file
plasmidID.log
The text was updated successfully, but these errors were encountered: