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issues while running docker command plasmidID #23

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alarawms opened this issue Aug 23, 2022 · 1 comment
Open

issues while running docker command plasmidID #23

alarawms opened this issue Aug 23, 2022 · 1 comment
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@alarawms
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please update the the docker run parameter,
the docker executable: plasmidID.sh not plasmidID

docker run -v $PWD:$PWD -w $PWD buisciii/plasmidid plasmidID.sh
-1 test/KPN_TEST_R1.fastq.gz
-2 test/KPN_TEST_R2.fastq.gz
-d test/plasmids_TEST_database.fasta
-c test/contigs_KPN_TEST.fasta
--no-trim
-s KPN

@saramonzon saramonzon self-assigned this Aug 25, 2022
@saramonzon saramonzon added the bug Something isn't working label Aug 25, 2022
@saramonzon
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Thanks for reporting! Will fix for the next release :)

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