forked from forlilab/CADD
/
FormsCADD.py
233 lines (175 loc) · 8.18 KB
/
FormsCADD.py
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#########################################################################
#########################################################################
# $Header: /mnt/raid/services/cvs/CADD/FormsCADD.py,v 1.4.4.1 2015/08/26 21:18:11 sanner Exp $
# $Id: FormsCADD.py,v 1.4.4.1 2015/08/26 21:18:11 sanner Exp $
import Tkinter
import sys, re, os
import string
from Tkinter import *
from mglutil.util.misc import ensureFontCase
from Vision.Forms import Dialog, ChangeFonts, BugReport, VarDict
class ColorDialog(Dialog):
def __init__(self):
Dialog.__init__(self)
def setDialogColor(self, bg, fg):
self.bg = bg
self.fg = fg
self.textFrame.config(bg = self.bg, fg = self.fg )
class AboutWF(Dialog, ColorDialog):
def __init__(self, name='', text='', bg="white", fg="black", avg="#000044"):
self.panel = None
self.name = name
self.text = text
self.bg = bg
self.fg = fg
self.avg = avg
self.buildPanel()
self.panel.protocol("WM_DELETE_WINDOW", self.Ok)
self.textFrame.configure(state='disabled')
def resetTags(self):
self.textFrame.tag_configure('email', font=(ensureFontCase('times'), 10, 'bold'),
foreground=self.avg)
self.textFrame.tag_configure('http', font=(ensureFontCase('times'), 12, 'bold'),
foreground=self.avg)
self.textFrame.tag_configure('normal10b',
font=(ensureFontCase('helvetica'), 10, 'bold'),
justify="right",
foreground=self.avg)
self.textFrame.tag_configure('mediumb',
font=(ensureFontCase('helvetica'), 14, 'bold'),
foreground=self.avg)
self.textFrame.tag_configure('title',
font=(ensureFontCase('helvetica'), 14, 'bold'),
foreground=self.avg, justify="center")
def buildPanel(self):
Dialog.buildPanel(self)
self.scroll.forget()
self.panel.title(self.name + ' workflows')
self.textFrame.configure()
self.textFrame.insert('end', self.text, 'normal12')
self.textFrame.config(bg = self.bg, fg = self.fg, height=15, width=100)
self.resetTags()
class AboutDialogCADD(AboutWF):
def __init__(self, bg, fg):
AboutWF.__init__(self, bg = bg, fg = fg)
def buildPanel(self):
AboutWF.buildPanel(self)
# remove scrollbar
self.scroll.forget()
# add own stuff
self.panel.title('About CADD')
self.textFrame.configure()
self.textFrame.insert('end', 'CADD Pipeline\n\n', 'title')
self.textFrame.insert('end',
'The Computer Aided Drug Discovery (CADD) Pipeline is a workflow environment\n'+\
'designed to support Molecular Dyanmics Simulations and Virtual Screening\n'+\
'experiments for in silico drug discovery.\n\n',
'normal12')
self.textFrame.insert('end',
'CADD pipeline is released as a set of Vision networks packaged for specific processes.\n\n',
'normal12')
self.textFrame.insert('end', 'Home page:\t', 'normal12')
self.textFrame.insert('end',
'http://www.nbcr.net/wiki/index.php?title=CADD_Pipeline\n\n',
'http')
class AcknowlDialogCADD(AboutWF):
def __init__(self, bg, fg):
AboutWF.__init__(self, bg = bg, fg = fg)
def buildPanel(self):
AboutWF.buildPanel(self)
# add own stuff
self.panel.title('Acknowledgements')
self.textFrame.insert('end', 'CADD Acknowledgements\n', 'title')
self.textFrame.insert('end',
'\n\tTSRI\t\t\t\tUCSD\n\n', 'http')
self.textFrame.insert('end',
'Sargis Dallakyan\t\t\t\tRommie Amaro\n'+\
'Stefano Forli\t\t\t\tLuca Clementi \n'+\
'Ruth Huey\t\t\t\tWilfred Li \n'+\
'Michel Sanner\t\t\t\tAndy Mccammon \n'+\
'Art Olson\t\t\t\tJane Ren (alumni) \n'+\
'Guillaume Vareille (alumni)\t\t\t\tNadyaWilliams', 'normal10')
class RefDialogCADD(AboutWF):
def __init__(self, bg, fg):
AboutWF.__init__(self, bg = bg, fg = fg)
def buildPanel(self):
AboutWF.buildPanel(self)
# remove scrollbar
self.scroll.forget()
# add own stuff
self.panel.title('References')
self.textFrame.insert('end', 'CADD References\n\n', 'title')
self.textFrame.insert('end',
'Opal web services for biomedical applications.\n','normal12')
self.textFrame.insert('end',
'Ren, J., Williams N., Clementi L., Krishnan S. and Li W. ','normal10')
self.textFrame.insert('end',
'Nucleic Acids Res 38: W724-31, 2010.\n\n','normal10')
self.textFrame.insert('end',
'Emerging methods for ensemble-based virtual screening.\n', 'normal12')
self.textFrame.insert('end',
'Amaro, R. and Li W. ', 'normal10')
self.textFrame.insert('end',
'Curr Top Med Chem 10: 3-13, 2010.\n\n','normal10')
class ChangeFontsCADD(ChangeFonts):
def __init__(self, editor=None):
ChangeFonts.__init__(self, editor=editor)
def Apply_cb(self, event=None):
if self.editor is not None:
cfg = self.get()
self.editor.setFont(cfg[0], cfg[1])
from CADD.UserLibBuildCADD import saveFonts4CADDFile
saveFonts4CADDFile(self.editor.font)
class BugReportCADD(AboutWF):
def __init__(self, bg, fg):
AboutWF.__init__(self, bg = bg, fg = fg)
def buildPanel(self):
AboutWF.buildPanel(self)
# remove scrollbar
self.scroll.forget()
# add own stuff
self.panel.title('References')
self.textFrame.insert('end', 'CADD Bug Report\n\n', 'title')
self.textFrame.insert('end',
'Please submit your bug report to admin@nbcr.net \n','http')
class BugReportCADD2(BugReport):
def __init__(self, title="Bug Report", message="", bg=None,
fg=None, font=(ensureFontCase('helvetica'), 10, 'bold'),):
BugReport.__init__(self, title, message, bg, fg, font,)
def show_upload_page(self):
self.get_description()
sumcont = VarDict['shortdesc_text']
desccont = VarDict['desc_text']
if len(sumcont)<=2 or len(desccont)<=2:
import tkMessageBox
ok = tkMessageBox.askokcancel("Input","Please enter summary and description")
return
from mglutil.TestUtil import BugReport
if VarDict.has_key('attachfile'):
upfile = VarDict['attachfile']
else:
upfile=[]
print "VarDict 2 :", VarDict
BR = BugReport.BugReportCommand("CADD")
if self.validateEmail(VarDict['email_recipient']):
idnum = BR.showuploadpage_cb(sumcont,desccont,upfile,email_ent=VarDict['email_recipient'])
else:
idnum = BR.showuploadpage_cb(sumcont,desccont,upfile,email_ent="")
self.Ok()
# Tk message Box
root = Tk()
t = Text(root)
t.pack()
def openHLink(event):
start, end = t.tag_prevrange("hlink",
t.index("@%s,%s" % (event.x, event.y)))
webbrowser.open_new('%s' %t.get(start, end))
#print "Going to %s..." % t.get(start, end)
t.tag_configure("hlink", foreground='blue', underline=1)
t.tag_bind("hlink", "<Control-Button-1>", openHLink)
t.insert(END, "BugReport has been Submiited Successfully\n")
t.insert(END, "BugId is %s" %idnum)
t.insert(END,"\nYou can visit Bug at\n")
t.insert(END,"http://mgldev.scripps.edu/bugs/show_bug.cgi?id=%i" %int(idnum),"hlink")
t.insert(END,"\nControl-click on the link to visit this page\n")
t.insert(END,"\n")