{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":161007784,"defaultBranch":"master","name":"GToTree","ownerLogin":"AstrobioMike","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2018-12-09T05:31:25.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/13923308?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1715207297.0","currentOid":""},"activityList":{"items":[{"before":"08d2db5df069ef7d946222ecab8a07807815532c","after":"9ed4b054152fcad7d8bade5b004b1aa002d3913b","ref":"refs/heads/master","pushedAt":"2024-05-24T21:48:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AstrobioMike","name":"Mike Lee","path":"/AstrobioMike","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13923308?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"8053a391596a76adf9f3d908ad717046da4d70bb","after":"08d2db5df069ef7d946222ecab8a07807815532c","ref":"refs/heads/master","pushedAt":"2024-05-08T22:21:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AstrobioMike","name":"Mike Lee","path":"/AstrobioMike","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13923308?s=80&v=4"},"commit":{"message":"fixing bug where taxonomy info wasn't being preserved (https://github.com/AstrobioMike/GToTree/issues/91)","shortMessageHtmlLink":"fixing bug where taxonomy info wasn't being preserved (#91)"}},{"before":"f4de56fd602604e0f0fe42c7147059345573848f","after":"8053a391596a76adf9f3d908ad717046da4d70bb","ref":"refs/heads/master","pushedAt":"2024-05-05T20:38:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AstrobioMike","name":"Mike Lee","path":"/AstrobioMike","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13923308?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"26af4de58aafd9129bd000c7121fe8f4490124c9","after":"f4de56fd602604e0f0fe42c7147059345573848f","ref":"refs/heads/master","pushedAt":"2024-05-05T20:36:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AstrobioMike","name":"Mike Lee","path":"/AstrobioMike","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13923308?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"7365fc07426ebb15e791b048c03145b27be8f4fe","after":"26af4de58aafd9129bd000c7121fe8f4490124c9","ref":"refs/heads/master","pushedAt":"2024-05-05T20:35:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AstrobioMike","name":"Mike Lee","path":"/AstrobioMike","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13923308?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"0a8cd5301e166ffec80f5d4312ccfdec67b1ceef","after":"7365fc07426ebb15e791b048c03145b27be8f4fe","ref":"refs/heads/master","pushedAt":"2024-05-03T02:18:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AstrobioMike","name":"Mike Lee","path":"/AstrobioMike","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13923308?s=80&v=4"},"commit":{"message":"typo fix in gtt-data-locations print out message","shortMessageHtmlLink":"typo fix in gtt-data-locations print out message"}},{"before":"656bb7009d135be7f2b7bd12dd4785d79a9cb27f","after":"0a8cd5301e166ffec80f5d4312ccfdec67b1ceef","ref":"refs/heads/master","pushedAt":"2024-05-02T02:08:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AstrobioMike","name":"Mike Lee","path":"/AstrobioMike","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13923308?s=80&v=4"},"commit":{"message":"update to gtt-gen-SCG-HMMs to work with slightly different column name in ncbi tables","shortMessageHtmlLink":"update to gtt-gen-SCG-HMMs to work with slightly different column nam…"}},{"before":"ca7ea3528b46e1fc5007765bcc99f9b7b1497af9","after":"656bb7009d135be7f2b7bd12dd4785d79a9cb27f","ref":"refs/heads/master","pushedAt":"2024-04-29T23:06:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AstrobioMike","name":"Mike Lee","path":"/AstrobioMike","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13923308?s=80&v=4"},"commit":{"message":"Update GToTree\n\nhelp menu tweak","shortMessageHtmlLink":"Update GToTree"}},{"before":"382f99d2b332fb595cec34aa4938dd9c7d40b65b","after":"ca7ea3528b46e1fc5007765bcc99f9b7b1497af9","ref":"refs/heads/master","pushedAt":"2024-02-19T16:52:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AstrobioMike","name":"Mike Lee","path":"/AstrobioMike","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13923308?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"5f87f9af74decb0a8e252294882e631ff96cc7e1","after":null,"ref":"refs/tags/v1.8.4","pushedAt":"2023-11-28T06:18:13.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"AstrobioMike","name":"Mike Lee","path":"/AstrobioMike","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13923308?s=80&v=4"}},{"before":"5f87f9af74decb0a8e252294882e631ff96cc7e1","after":"382f99d2b332fb595cec34aa4938dd9c7d40b65b","ref":"refs/heads/master","pushedAt":"2023-11-28T06:17:49.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"AstrobioMike","name":"Mike Lee","path":"/AstrobioMike","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13923308?s=80&v=4"},"commit":{"message":"update","shortMessageHtmlLink":"update"}},{"before":"cb9d1be0c756662c02a22953f5cbd19764913d0a","after":"5f87f9af74decb0a8e252294882e631ff96cc7e1","ref":"refs/heads/master","pushedAt":"2023-11-08T23:35:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AstrobioMike","name":"Mike Lee","path":"/AstrobioMike","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13923308?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"8a0e5ca2d83c18037ca75207f038f184cd2d85ae","after":"cb9d1be0c756662c02a22953f5cbd19764913d0a","ref":"refs/heads/master","pushedAt":"2023-11-08T23:34:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AstrobioMike","name":"Mike Lee","path":"/AstrobioMike","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13923308?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"ad00ea14abc905c4b6c95ca7f7aebd99de3005e1","after":"8a0e5ca2d83c18037ca75207f038f184cd2d85ae","ref":"refs/heads/master","pushedAt":"2023-10-14T21:24:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AstrobioMike","name":"Mike Lee","path":"/AstrobioMike","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13923308?s=80&v=4"},"commit":{"message":"Update test-conda-installs.yml\n\n- having errors with mamba in macos test, trying workaround as noted here: https://github.com/conda-incubator/setup-miniconda/issues/274#issue-1531425010","shortMessageHtmlLink":"Update test-conda-installs.yml"}},{"before":"2cba70b7d75cd1cdc5fd9ea3b8e2ccee8cf0833f","after":"ad00ea14abc905c4b6c95ca7f7aebd99de3005e1","ref":"refs/heads/master","pushedAt":"2023-10-14T21:18:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AstrobioMike","name":"Mike Lee","path":"/AstrobioMike","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13923308?s=80&v=4"},"commit":{"message":"Update test-conda-installs.yml\n\n- having errors with mamba in macos test, trying workaround as noted here: https://github.com/conda-incubator/setup-miniconda/issues/274#issue-1531425010","shortMessageHtmlLink":"Update test-conda-installs.yml"}},{"before":"24c09d13d0552959a899e6f05b967cf2340ab950","after":"2cba70b7d75cd1cdc5fd9ea3b8e2ccee8cf0833f","ref":"refs/heads/master","pushedAt":"2023-10-14T21:05:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AstrobioMike","name":"Mike Lee","path":"/AstrobioMike","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13923308?s=80&v=4"},"commit":{"message":"Update test-conda-installs.yml\n\n- removing gtt-test.sh execution (i think intended errors i have in there are causing a failure)","shortMessageHtmlLink":"Update test-conda-installs.yml"}},{"before":"b42886836e2f8b0ed346aa049769bd16816e4cf9","after":"24c09d13d0552959a899e6f05b967cf2340ab950","ref":"refs/heads/master","pushedAt":"2023-10-14T20:56:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AstrobioMike","name":"Mike Lee","path":"/AstrobioMike","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13923308?s=80&v=4"},"commit":{"message":"Update test-conda-installs.yml\n\n- adding execution of `gtt-test.sh` at end","shortMessageHtmlLink":"Update test-conda-installs.yml"}},{"before":"c9c2ebbab07ccd2d60f9e9b3100b6ee7a5154cbf","after":"b42886836e2f8b0ed346aa049769bd16816e4cf9","ref":"refs/heads/master","pushedAt":"2023-10-14T20:28:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AstrobioMike","name":"Mike Lee","path":"/AstrobioMike","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13923308?s=80&v=4"},"commit":{"message":"updating gtdb links from tar to tsv in due to change on gtdb side, thanks to note from @jmtsuji (https://github.com/AstrobioMike/GToTree/issues/81)","shortMessageHtmlLink":"updating gtdb links from tar to tsv in due to change on gtdb side, th…"}},{"before":"26361fd366411d6a567cdb2112bfa7d112742a95","after":"c9c2ebbab07ccd2d60f9e9b3100b6ee7a5154cbf","ref":"refs/heads/master","pushedAt":"2023-10-14T20:22:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AstrobioMike","name":"Mike Lee","path":"/AstrobioMike","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13923308?s=80&v=4"},"commit":{"message":"updating gtdb links from tar to tsv due to change on gtdb side, thanks to note from @jmtsuji (https://github.com/AstrobioMike/GToTree/issues/81)","shortMessageHtmlLink":"updating gtdb links from tar to tsv due to change on gtdb side, thank…"}},{"before":"b11fe5260efb4338a4eb9054fdf17860de049b08","after":"26361fd366411d6a567cdb2112bfa7d112742a95","ref":"refs/heads/master","pushedAt":"2023-10-10T05:33:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AstrobioMike","name":"Mike Lee","path":"/AstrobioMike","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13923308?s=80&v=4"},"commit":{"message":"Update README.md\n\n- updating number of citations","shortMessageHtmlLink":"Update README.md"}},{"before":"803511539500d085af3afe8b65b898f0b5d64dbe","after":"b11fe5260efb4338a4eb9054fdf17860de049b08","ref":"refs/heads/master","pushedAt":"2023-10-10T05:30:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AstrobioMike","name":"Mike Lee","path":"/AstrobioMike","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13923308?s=80&v=4"},"commit":{"message":"Update README.md\n\n- updating number of conda installs","shortMessageHtmlLink":"Update README.md"}},{"before":"7835991845319f15737779313745605584deb6de","after":"803511539500d085af3afe8b65b898f0b5d64dbe","ref":"refs/heads/master","pushedAt":"2023-07-25T17:13:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AstrobioMike","name":"Mike Lee","path":"/AstrobioMike","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13923308?s=80&v=4"},"commit":{"message":"adding http option to gtt-test.sh thanks to note from @corkdagga (https://github.com/AstrobioMike/GToTree/issues/78)","shortMessageHtmlLink":"adding http option to gtt-test.sh thanks to note from @corkdagga (#78)"}},{"before":"9eb248ad5a54563370978d3575727eb63ad93483","after":"7835991845319f15737779313745605584deb6de","ref":"refs/heads/master","pushedAt":"2023-07-25T16:59:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AstrobioMike","name":"Mike Lee","path":"/AstrobioMike","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13923308?s=80&v=4"},"commit":{"message":"updating gtt-get-ncbi-tax-data to pull from http instead of ftp when -P flag provided to main program","shortMessageHtmlLink":"updating gtt-get-ncbi-tax-data to pull from http instead of ftp when …"}},{"before":"b5382ce9a2cce995a5ca264eadb8c7f4fa8c16a7","after":"9eb248ad5a54563370978d3575727eb63ad93483","ref":"refs/heads/master","pushedAt":"2023-07-25T16:40:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AstrobioMike","name":"Mike Lee","path":"/AstrobioMike","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13923308?s=80&v=4"},"commit":{"message":"check for ncbi assemblies \"date-retrieved.txt\" file includes checking if it is empty now to avoid error that did not affect anything","shortMessageHtmlLink":"check for ncbi assemblies \"date-retrieved.txt\" file includes checking…"}},{"before":"aa081dab6d5c757684c503c909c5e666d05178a8","after":"b5382ce9a2cce995a5ca264eadb8c7f4fa8c16a7","ref":"refs/heads/master","pushedAt":"2023-07-25T16:00:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AstrobioMike","name":"Mike Lee","path":"/AstrobioMike","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13923308?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"1b69666ceda922365dfceded3d76ff47ecb5899c","after":"aa081dab6d5c757684c503c909c5e666d05178a8","ref":"refs/heads/master","pushedAt":"2023-06-11T04:10:25.475Z","pushType":"push","commitsCount":1,"pusher":{"login":"AstrobioMike","name":"Mike Lee","path":"/AstrobioMike","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13923308?s=80&v=4"},"commit":{"message":"update to workflow trigger","shortMessageHtmlLink":"update to workflow trigger"}},{"before":"44abe26d39fef3f3e9938c727f19cf70c4646bdb","after":"1b69666ceda922365dfceded3d76ff47ecb5899c","ref":"refs/heads/master","pushedAt":"2023-06-11T04:01:55.822Z","pushType":"push","commitsCount":1,"pusher":{"login":"AstrobioMike","name":"Mike Lee","path":"/AstrobioMike","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13923308?s=80&v=4"},"commit":{"message":"removing config pages test","shortMessageHtmlLink":"removing config pages test"}},{"before":"8e8187cbef16d179b6fd0131f54fa5a223d11e9f","after":"44abe26d39fef3f3e9938c727f19cf70c4646bdb","ref":"refs/heads/master","pushedAt":"2023-06-11T03:58:34.255Z","pushType":"push","commitsCount":1,"pusher":{"login":"AstrobioMike","name":"Mike Lee","path":"/AstrobioMike","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13923308?s=80&v=4"},"commit":{"message":"adding github action to test conda installs","shortMessageHtmlLink":"adding github action to test conda installs"}},{"before":"fe56123740210100996d0a6fa87e123b4fd1cc11","after":"8e8187cbef16d179b6fd0131f54fa5a223d11e9f","ref":"refs/heads/master","pushedAt":"2023-06-07T23:20:16.889Z","pushType":"push","commitsCount":1,"pusher":{"login":"AstrobioMike","name":"Mike Lee","path":"/AstrobioMike","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13923308?s=80&v=4"},"commit":{"message":"Create _config.yml","shortMessageHtmlLink":"Create _config.yml"}},{"before":"1562e849a408fcb6971c98449e243c06d20d02e7","after":"fe56123740210100996d0a6fa87e123b4fd1cc11","ref":"refs/heads/master","pushedAt":"2023-06-07T23:19:48.060Z","pushType":"push","commitsCount":1,"pusher":{"login":"AstrobioMike","name":"Mike Lee","path":"/AstrobioMike","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13923308?s=80&v=4"},"commit":{"message":"Delete _config.yml","shortMessageHtmlLink":"Delete _config.yml"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEU20kGQA","startCursor":null,"endCursor":null}},"title":"Activity · AstrobioMike/GToTree"}