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MRI-preprocessing-techniques in Python

Code examples of the free course in Youtube of brain MRI preprocessing techniques in python

Create virtualenv

mkdir .venv
python -m venv .venv
source .venv/bin/activate

pip install -r requirements.txt

About /assets

I selected sample images and templates from the following sources

Datasets :

  • FSL open science dev dataset
  • Washington University 120
  • Kung fu panda
  • An fMRI dataset during a passive natural language listening task

Source : https://openneuro.org/

Templates:

  • ICBM 2009a Nonlinear Symmetric (NIFTI)

Source : https://nist.mni.mcgill.ca/icbm-152-nonlinear-atlases-2009/